PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456483.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 429aa    MW: 46578.5 Da    PI: 6.4681
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456483.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.61.9e-11230282557
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                     kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+    
  XP_016456483.1 230 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTETTTLSAQLTLLQRDTN 282
                     9******************************************9999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-13226290IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.841228291IPR004827Basic-leucine zipper domain
PfamPF001703.4E-9230280IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.75E-11230284No hitNo description
Gene3DG3DSA:1.20.5.1703.6E-11230284No hitNo description
CDDcd147035.83E-19231280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDKSSSHTVG SLPPLGRYSL FSPPGGSSNA KLEQSGLANL PPLGPGNASE SGHFGHGLSA  60
DSSRFSHDIS RMPDNPPKKF GHRRAHSEIL TLPDDISFDS DLGVVGGLDG PSLSDETEED  120
FLSMYLDMDK FNSSSVSSDF QVGESSSSAA AASGSLQIPA MASAASGSDN VGPTASAKPR  180
VRHQHSQSMD GSTTIKPEML MSGIDEASPL ETKKATSAAK LAELALVDPK RAKRIWANRQ  240
SAARSKERKM RYIAELERKV QTLQTETTTL SAQLTLLQRD TNGLTAEDSE LKLRLQTMEQ  300
QVHLQDALND ALKEEIQHLK VLTGQGIANG GPMMNFPASF GGNQQFYSNN HAMHTLLAAQ  360
QLQQLQIHSH KQQHQFQQHQ LHQFQQQQQL QHQQQLQEQL HQAGDMNSRS SLSSPQNDNG  420
SDTSAISKD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456483.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-146POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A1S3YWG30.0A0A1S3YWG3_TOBAC; probable transcription factor PosF21
STRINGXP_009799286.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39652137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-123bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]