PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456347.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 337aa    MW: 37526.5 Da    PI: 8.7411
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.7e-18185239256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_016456347.1 185 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 239
                     788899***********************************************98 PP
2HD-ZIP_I/II127.55.6e-41185275192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +lk
  XP_016456347.1 185 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENKRLQKELQELR-ALK 275
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-18174242IPR009057Homeodomain-like
PROSITE profilePS5007117.135181241IPR001356Homeobox domain
SMARTSM003896.9E-16183245IPR001356Homeobox domain
CDDcd000863.87E-15185242No hitNo description
Gene3DG3DSA:1.10.10.602.8E-17185239IPR009057Homeodomain-like
PfamPF000461.7E-15185239IPR001356Homeobox domain
PROSITE patternPS000270216239IPR017970Homeobox, conserved site
SMARTSM003407.1E-25241284IPR003106Leucine zipper, homeobox-associated
PfamPF021835.9E-10241275IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MELALSLGGD TPKSFLFLEK SSSSSSLHEK LMDSSKDLGF CMGLRKCSED KSRKNKQRRS  60
QDLKEGHVSK GSSDPMLQLD LLPFSPVSRD ISSQLHFPWL TENTGEPGPA GKVLDMNRRQ  120
LVAEETEEGA ALSSPNSAIS TFQVNFPIYR NGNKLLGKRE CEGDHVERWG NSSSRASDEE  180
DGSARKKLRL TKEQSAFLEE SFKEHNTLNP KQKLALAKQL NLRPRQVEVW FQNRRARTKL  240
KQTEVDCEYL KKCCETLTEE NKRLQKELQE LRALKSSQPF YMQLPATTLT MCPSCERVVT  300
ATSSAAAASA AAAANTTLTL AKPEPFPFSP AHVQAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233241RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798791.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like isoform X2
RefseqXP_016456347.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like isoform X2
SwissprotP466652e-95HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S3YWX90.0A0A1S3YWX9_TOBAC; homeobox-leucine zipper protein HAT14-like isoform X2
TrEMBLA0A1U7YA230.0A0A1U7YA23_NICSY; homeobox-leucine zipper protein HAT14-like isoform X2
STRINGXP_009798790.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.18e-75homeobox from Arabidopsis thaliana