PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456346.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 338aa    MW: 37609.6 Da    PI: 8.7411
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.7e-18186240256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_016456346.1 186 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 240
                     788899***********************************************98 PP
2HD-ZIP_I/II127.55.7e-41186276192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +lk
  XP_016456346.1 186 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENKRLQKELQELR-ALK 276
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-18175243IPR009057Homeodomain-like
PROSITE profilePS5007117.135182242IPR001356Homeobox domain
SMARTSM003896.9E-16184246IPR001356Homeobox domain
CDDcd000863.69E-15186243No hitNo description
PfamPF000461.7E-15186240IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-17186240IPR009057Homeodomain-like
PROSITE patternPS000270217240IPR017970Homeobox, conserved site
PfamPF021836.0E-10242276IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.1E-25242285IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MELALSLGGD TPKSFLFLEK SSSSSSLHEK LMDSSKDLGF CMGLRKCSED KSRKNKQRRS  60
QDLKEGHVSK GSSDPMLQLD LLPFSPVSRD ISSQLHFPWL TENIAGEPGP AGKVLDMNRR  120
QLVAEETEEG AALSSPNSAI STFQVNFPIY RNGNKLLGKR ECEGDHVERW GNSSSRASDE  180
EDGSARKKLR LTKEQSAFLE ESFKEHNTLN PKQKLALAKQ LNLRPRQVEV WFQNRRARTK  240
LKQTEVDCEY LKKCCETLTE ENKRLQKELQ ELRALKSSQP FYMQLPATTL TMCPSCERVV  300
TATSSAAAAS AAAAANTTLT LAKPEPFPFS PAHVQAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234242RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798790.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like isoform X1
RefseqXP_016456346.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like isoform X1
SwissprotP466651e-95HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S3YVL00.0A0A1S3YVL0_TOBAC; homeobox-leucine zipper protein HAT14-like isoform X1
TrEMBLA0A1U7YIY50.0A0A1U7YIY5_NICSY; homeobox-leucine zipper protein HAT14-like isoform X1
STRINGXP_009798790.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-75homeobox from Arabidopsis thaliana