PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456229.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 500aa    MW: 57024.7 Da    PI: 4.7773
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.22.2e-811174852373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                     ++lLl  Aea+++g+l la+ ++ rl+ + s + +    p+ Rla yft++L  + ++   + ++ l  +++ + +ss +++ +++++e+sP++k
  XP_016456229.1 117 TDLLLMGAEAIEAGNLDLASVVVLRLNIILSDQEKrensPLDRLAMYFTQGLLYKSLS---TSSHELLNQNQYQPESSPSITPFQMLQEISPYVK 208
                     5789999*******************9997666544555************9766555...44444444444445689999999*********** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     f+h+taNqaIlea++g+++vHi+Dfdi++G+QWp+L+  L +R +   slRiT+v+  +++++  +++t +rL++fA+++++pf f+ +  ++ e
  XP_016456229.1 209 FAHFTANQAILEATKGSQQVHILDFDIMEGIQWPPLMVDLVERGNFNSSLRITAVVV-DKNNSFHVQKTCKRLQEFADSINLPFIFDQVFLTKEE 302
                     ********************************************************9.66799*************************8666666 PP

            GRAS 188 dleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpr 277
                     dl  e++  v+++ +l+ n++++  +++++  sl +   ++ + +++lsPk+vv+ve+e    ++  s sF+e f+eal++y+++ ds+  +++ 
  XP_016456229.1 303 DL--ENIqGVESHNNLIANVMIHQLHIPQRGSSLVK---TFFNGLRRLSPKIVVLVEEElfnlTKIPSMSFVEFFCEALHHYTTISDSILGGFGG 392
                     55..777246669*********999***88888888...********************7664455788********************666666 PP

            GRAS 278 es.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                         + +++E+e+lg +i ++v +   e+ er    ekW+e l +  GF+++p+s++++ qak+l++ ++  gy v++e+  l l+Wk+rpL+++
  XP_016456229.1 393 GYkLALRVIEKEFLGVRILDCVRQFPCEKSER----EKWSEGLYSlKGFRQIPMSSSNVRQAKHLVSLFS-GGYWVQNEHCKLALCWKSRPLTTA 482
                     5538999****************999996666....56***997658***********************.89********************** PP

            GRAS 371 SaW 373
                     S W
  XP_016456229.1 483 SIW 485
                     *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.28690467IPR005202Transcription factor GRAS
PfamPF035147.5E-79117485IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MECENFQPSY INPFLEYSTL ETTFPWPNSS INPHCSIQDF VTVVNDVDIQ DYFQNDFDFI  60
DGDVDFHVQN SQKFPLFSSQ QVVQEDTDFL NEGQKLRVYS SELKLLQDQL MEETSITDLL  120
LMGAEAIEAG NLDLASVVVL RLNIILSDQE KRENSPLDRL AMYFTQGLLY KSLSTSSHEL  180
LNQNQYQPES SPSITPFQML QEISPYVKFA HFTANQAILE ATKGSQQVHI LDFDIMEGIQ  240
WPPLMVDLVE RGNFNSSLRI TAVVVDKNNS FHVQKTCKRL QEFADSINLP FIFDQVFLTK  300
EEDLENIQGV ESHNNLIANV MIHQLHIPQR GSSLVKTFFN GLRRLSPKIV VLVEEELFNL  360
TKIPSMSFVE FFCEALHHYT TISDSILGGF GGGYKLALRV IEKEFLGVRI LDCVRQFPCE  420
KSEREKWSEG LYSLKGFRQI PMSSSNVRQA KHLVSLFSGG YWVQNEHCKL ALCWKSRPLT  480
TASIWVPTSS SSSPSNSISF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3912448927382Protein SCARECROW
5b3h_A2e-3912448926381Protein SCARECROW
5b3h_D2e-3912448926381Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456229.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1S3YVQ60.0A0A1S3YVQ6_TOBAC; nodulation-signaling pathway 2 protein-like
STRINGXP_009606529.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.16e-47GRAS family protein