PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456193.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 301aa    MW: 33204.1 Da    PI: 9.1443
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.48.4e-32160214358
       CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     p+YVNaKQy++IlkRRq Rakle ++kl  k rkpylheSRh+hA++R+Rg+gGrF
  XP_016456193.1 160 PIYVNAKQYSAILKRRQVRAKLEVQNKL-VKDRKPYLHESRHRHAMKRARGTGGRF 214
                     9***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-36156217IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.821157217IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-27160214IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.2E-24160182IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860162182IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.2E-24191214IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MISFSQKGVC GKEGQSFTPL FVNCSSMWSS GEQPENAPSK SVLTGAESAS KCHFNIKQSE  60
SQYQDQDSTS TLSTGQSDHV ETPMAKSNTV LQNVALHPGW DGIYEVQGER GTKASLSGKN  120
ATNTLPQPHV HHNHPMIYPQ MVGVTSTRVA LPLECTESLP IYVNAKQYSA ILKRRQVRAK  180
LEVQNKLVKD RKPYLHESRH RHAMKRARGT GGRFLNTQNM QQSKPSSPTH DKSIFKGTAG  240
GNLTRSMVQH SESGSWGTST QSGSDVTSIF SGDDMFQQPE FRVSGFPFHM QEAEDFMHVG  300
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19160228472NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198207RHRHAMKRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8654091e-175KJ865409.1 Capsicum annuum cultivar CMS line FS4401 mitochondrion, complete genome.
GenBankKJ8654101e-175KJ865410.1 Capsicum annuum cultivar Jeju mitochondrion, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456193.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
RefseqXP_016456194.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
TrEMBLA0A1S3YVN90.0A0A1S3YVN9_TOBAC; nuclear transcription factor Y subunit A-3-like isoform X2
STRINGXP_009608945.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-41nuclear factor Y, subunit A3