PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016456163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 440aa MW: 49602.9 Da PI: 4.7447 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.7 | 1.2e-32 | 55 | 194 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 lp+G++F+Ptd+e++++ L k g++ + +e+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + XP_016456163.1 55 LPRGVKFDPTDQEIIWHLLGKVEVGSRsshpfI--DEFIPTVDeddgICYTHPQNLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRKIHgdnfgDV 146 799************776665544444565332..334666544556**********.677888899******************8655555588 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tg++k+v+ +g + g+kk++v+y + k+ekt+Wvmh+y+l XP_016456163.1 147 RWHKTGRTKPVIL-DGIQRGCKKIMVLYisPVKGGKAEKTNWVMHQYHL 194 8************.99************6545777888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-38 | 41 | 213 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.831 | 55 | 213 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-14 | 56 | 194 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MRPSWLVDSK RIATKIKSAS GDPGAVNWKS NPTKACPKCQ FIIDNNDVSN DWPGLPRGVK 60 FDPTDQEIIW HLLGKVEVGS RSSHPFIDEF IPTVDEDDGI CYTHPQNLPG VKQDGSVSHF 120 FHRAIKAYNT GTRKRRKIHG DNFGDVRWHK TGRTKPVILD GIQRGCKKIM VLYISPVKGG 180 KAEKTNWVMH QYHLGTGEDE REGEYVVSKV FYQQQQQVKQ GDKIEQELPE DADYLVAKVD 240 PHTPKSVTPE PPRGERISSS MDARQQIAAS SISPTTQYHD VDYTEDDMGA LPYQTENQDQ 300 IIENQIDEDG TKVDNETGDD PKWWDSESQY LLDSQQLVEG LSLCDDLLAS QSPNRDEHDN 360 DTDKNKEKKC KPSLADYAQL GPEDLKKDLE ECQHLVLDPA NIDMDTPPDF RLSQLEFGSQ 420 DSYIAWGGSK FGFDSGEHVG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-171 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770387.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X3 | ||||
Refseq | XP_016456163.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like isoform X4 | ||||
Refseq | XP_016456164.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like isoform X4 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1S3YVH6 | 0.0 | A0A1S3YVH6_TOBAC; NAC domain-containing protein 8-like isoform X4 | ||||
TrEMBL | A0A1U7VR48 | 0.0 | A0A1U7VR48_NICSY; NAC domain-containing protein 8 isoform X3 | ||||
STRING | XP_009770385.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-173 | NAC family protein |