PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456105.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 409aa    MW: 46388 Da    PI: 7.8835
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.88.7e-32234288155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt++LH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR 
  XP_016456105.1 234 KTRIRWTQDLHDRFVECVNRLGGADKATPKAILKLMESDGLTIFHVKSHLQKYRN 288
                     68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-17233288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-28233289IPR009057Homeodomain-like
PROSITE profilePS5129410.032233291IPR017930Myb domain
TIGRFAMsTIGR015572.4E-24234289IPR006447Myb domain, plants
PfamPF002492.0E-8238287IPR001005SANT/Myb domain
PfamPF143792.3E-21318365IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSIQRVGTQE RVPKNSAYAS DYTLEFARMP VQALHAQKLS SSYMGFSLPP ATSAEDVCQQ  60
QQQIFPNANS SLNSTIIGRI GSPSSAFFAT ERYLGLTQYD DQQDNCSQLS KNYDFQIPSY  120
GFLPDSSAEV LQNFHPKISL PPFIRSQFSS SQPFSPDHYR SPFSSLTEKE RILHLKRKLL  180
GEFDSASTLF DGNQDFSLPH NLCGSHLEYM KQQSGFPSAN TNNSACSGGS VCNKTRIRWT  240
QDLHDRFVEC VNRLGGADKA TPKAILKLME SDGLTIFHVK SHLQKYRNAK YIPEPTDGKS  300
EKRNYPNNVS QIDSKTGMQI KEALQMQLEV QRRLHEQLEI QRKLQLRIEE QGKQLKMIFD  360
QQQRTTRSLL DTQNSSISTP EENPSTLYDN MEVLVAQGYD NIHFQSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456105.10.0PREDICTED: uncharacterized protein LOC107780100
TrEMBLA0A1S3YVQ80.0A0A1S3YVQ8_TOBAC; uncharacterized protein LOC107780100
STRINGXP_009603787.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.18e-73G2-like family protein