PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456072.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-X1
Protein Properties Length: 760aa    MW: 84279.4 Da    PI: 8.1784
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456072.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.93.2e-06296315120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+HkC++ CHeG+C+ Cp+
  XP_016456072.1 296 CGRHKCERGCHEGECGDCPL 315
                     ******************95 PP
2zf-NF-X120.51.1e-06403422120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H C+++C+ G+CppC++
  XP_016456072.1 403 CGRHACKRKCCDGDCPPCSE 422
                     ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060085.07E-5179227No hitNo description
PfamPF014220.061191208IPR000967Zinc finger, NF-X1-type
SMARTSM004380.072191209IPR000967Zinc finger, NF-X1-type
CDDcd060083.63E-6233281No hitNo description
SMARTSM004380.0041243262IPR000967Zinc finger, NF-X1-type
PfamPF014220.0057245261IPR000967Zinc finger, NF-X1-type
CDDcd060089.59E-9286329No hitNo description
PfamPF014227.7E-4296314IPR000967Zinc finger, NF-X1-type
SMARTSM004380.001296315IPR000967Zinc finger, NF-X1-type
CDDcd060081.71E-8340389No hitNo description
PfamPF014220.0022350369IPR000967Zinc finger, NF-X1-type
SMARTSM004380.19350370IPR000967Zinc finger, NF-X1-type
CDDcd060081.48E-7393441No hitNo description
PfamPF014223.7E-4403421IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0036403422IPR000967Zinc finger, NF-X1-type
CDDcd060085.84E-9420468No hitNo description
PfamPF014220.0074430448IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0043430449IPR000967Zinc finger, NF-X1-type
SMARTSM00438130487508IPR000967Zinc finger, NF-X1-type
PfamPF014221.3497507IPR000967Zinc finger, NF-X1-type
PfamPF0142224516525IPR000967Zinc finger, NF-X1-type
SMARTSM0043866516561IPR000967Zinc finger, NF-X1-type
PfamPF014220.058598608IPR000967Zinc finger, NF-X1-type
SMARTSM004387.7598630IPR000967Zinc finger, NF-X1-type
SMARTSM004380.07640658IPR000967Zinc finger, NF-X1-type
PfamPF014222.3642657IPR000967Zinc finger, NF-X1-type
SMARTSM004386703724IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MTSWSATVAP PLSPPSSDSD SDSDSATTSD SHHHRHSDLS STIFKSYLEH SSGDHNNQQQ  60
QQHDLIKIQS FLTSSRSGAL SCLICLERIR PSDPTWSCSS GCFAVFYLHC IQSWAVQCSN  120
LAAARAVTRA ATPNDSSLLW HCPKCRVEYS KSQIPKNYYC FCGKLPDPPH DPWVLPHSCN  180
EICGRPLKYN CGHHCLLLCH PGPCPSCPKL VKSRCFCGAV EDVKRCGFKN FSCNGVCKKL  240
LDCKTHMCTE TCHEGDCPPC KAKGIYKCQC GKLEMKRECF DRVFRCENPC DKLLGCGRHK  300
CERGCHEGEC GDCPLQGKRT CPCGKRVYEG IACDAPVSVC GATCGKMLSC GFHRCPERCH  360
KGPCIETCRV VVTKSCRCGS YRKQVPCYQD LTCERKCQKM RDCGRHACKR KCCDGDCPPC  420
SEMCDRKLRC RNHKCPAPCH RGACAPCPVM VTISCLCGET HFEVPCGAEA EQKPPKCRKP  480
CCVDRLCRHA SNCKPHRCHY GACPPCRLLC DEEYPCGHKC ELRCHGPTQP PLPEFTLKPK  540
KRRPNNQTEP TPGSSCPPCP QLVWRSCLGN HVGAERMMVC SDRTVFSCDN LCGNPLPCGN  600
HYCTKVCHAL VSSTKLYGSR RPESCEECTL PCQQERKPTC PHPCPLRCHP GECPPCKALI  660
KRSCHCGSMV HVFECIYYNS LSAKEQLTVR SCGGPCHRKL PNCTHLCPET CHPGECPSPD  720
QCSKKVTARC GCQTLKKELV CKDVQAAYRS NGTDPKDVSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1536542LKPKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6782980.0AY678298.1 Lycopersicon esculentum clone 56B23 chromosome 6, genomic sequence.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456072.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2-like, partial
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A1S3YVU20.0A0A1S3YVU2_TOBAC; NF-X1-type zinc finger protein NFXL2-like
STRINGXP_009586602.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors