PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456067.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 268aa    MW: 30872.5 Da    PI: 6.5096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456067.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08155195954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_016456067.1 155 ARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 195
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-15151213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-13152210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.70E-11152200No hitNo description
PfamPF000108.0E-6156195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDINHHLKLT TTTWQPTMAN MNDNIFDDHH HHQQQQQQQQ QQRQFPFDHN PIWPSFPLQN  60
PHHHLPSFSS ELQQQREQQV PFDHVGNNHV QTLIEDHHDQ EPEDDEEEEE EELGAMKEMM  120
FKIAAMQPVD IDPATIRKPK RRNVRISNDP QSVAARLRRE RISEKIRILQ RLVPGGTKMD  180
TASMLDEAIR YVKFLKRQIR QLQSSNHHLS PSQVPVVPCP NTENWANMVT PTKALILGSS  240
GITTTTIATT TTFVGNSASN PTYEVIGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783821.10.0PREDICTED: transcription factor HEC3-like
RefseqXP_016456067.10.0PREDICTED: transcription factor HEC3-like
TrEMBLA0A1S3YVT80.0A0A1S3YVT8_TOBAC; transcription factor HEC3-like
TrEMBLA0A1U7X2C50.0A0A1U7X2C5_NICSY; transcription factor HEC3-like
STRINGXP_009783821.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.14e-46bHLH family protein