PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016456031.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 346aa MW: 39966.8 Da PI: 6.2901

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016456031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171	3.8e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kk++++++++ +vik++d+yk+ePwdL++ ++ +ee+ +wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ XP_016456031.1 8 VPPGFRFHPTDEELVDYYLRKKITSRRIDV-DVIKDIDLYKIEPWDLQElcRMGTEEQsDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 101 69**************************.9***********954555554445******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +s k+ l+g++ktLv+ykgrap+g+k+d +mheyrle XP_016456031.1 102 YS-KHDLIGMRKTLVYYKGRAPNGQKSDFIMHEYRLE 137 .8899****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.06E-58	5	157	IPR003441	NAC domain
PROSITE profile	PS51005	56.83	8	157	IPR003441	NAC domain
Pfam	PF02365	3.9E-27	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MMNSFSQVPP GFRFHPTDEE LVDYYLRKKI TSRRIDVDVI KDIDLYKIEP WDLQELCRMG 60 TEEQSDWYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKA IYSKHDLIGM RKTLVYYKGR 120 APNGQKSDFI MHEYRLETDP NGAPQDEGWV ICRVFKKKIA AMRMDTSEHG SPIWYDDQLS 180 FMPDNMDSPK PPYPHSTITT YNNHYPNYPN CKKELDNLHY QIPPHQQFLQ LPLLETNSKL 240 LAAAPSGISC SSMPIFGINV NQEHLHPTFG NNINRGCTND QVEDQVTDWR VLDKFVASQL 300 SQEDENNYSN ARGDDSNLMV KVLDKQEMAP ENTSTASSSS QIDLWK

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MMNSFSQVPP GFRFHPTDEE LVDYYLRKKI TSRRIDVDVI KDIDLYKIEP WDLQELCRMG  60
TEEQSDWYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKA IYSKHDLIGM RKTLVYYKGR  120
APNGQKSDFI MHEYRLETDP NGAPQDEGWV ICRVFKKKIA AMRMDTSEHG SPIWYDDQLS  180
FMPDNMDSPK PPYPHSTITT YNNHYPNYPN CKKELDNLHY QIPPHQQFLQ LPLLETNSKL  240
LAAAPSGISC SSMPIFGINV NQEHLHPTFG NNINRGCTND QVEDQVTDWR VLDKFVASQL  300
SQEDENNYSN ARGDDSNLMV KVLDKQEMAP ENTSTASSSS QIDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-48	8	158	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-101	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009602844.1	0.0	PREDICTED: NAC domain-containing protein 7-like
Refseq	XP_016456031.1	0.0	PREDICTED: NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-132	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A1S3YUR9	0.0	A0A1S3YUR9_TOBAC; NAC domain-containing protein 7-like
STRING	XP_009602844.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-108	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]