PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016455855.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 969aa MW: 105823 Da PI: 6.3875

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016455855.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.9e-29	563	614	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ XP_016455855.1 563 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 614 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.097	546	634	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-26	567	614	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-22	866	952	No hit	No description
SMART	SM00666	1.1E-23	869	951	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.0E-24	869	951	No hit	No description
Pfam	PF00564	7.2E-19	869	950	IPR000270	PB1 domain
PROSITE profile	PS51745	20.581	869	951	IPR000270	PB1 domain
CDD	cd06407	3.29E-33	870	950	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence Send to blast
MERGVGFWAS PRGQMEGVVA FDAGARSSNV DDSFNNVMEI MNLDAYTGWC TSPSAAEQMF 60 ASYAAFSQIN SMSQSYAPFE GLSYTEQNTG TFPPMDANMV GSTVCGGEKM MFGQNDEQLH 120 FVVDSTDGVG LVAKRSKNSS QQADDADIGN SMIVRSPSQP LAERMLRALA MFKESSGAGI 180 LAQVWIPMKN KDRYILSTCE QPYLLDQALS GYREVSRKFT FDAETKPGSI PGLPGRVFSS 240 RIPEWTSNVL YYKEAEYLRG GGTFLSLSHE PFCIVVCARL QAVNLRSIAP PRLHSQSLSK 300 NQRAALAEIT DVLRAVCHAH KLPLALTWIP CSVTEGEGDE SIRVLARGCN ASSNEKCVLC 360 AEDTACYASD KEMQGFVHAC MEHYLEEGEG IVGKALQSNH PFFYPDVKEY HISEYPLVHH 420 ARKFGLNAAV AIRLRSTFTG NDDYILEFFL PISMKGSTEQ QLLLNNLSGT MQRICRSLRT 480 VSDAELVGQG ATFGLQDGFA PNLPPITLSR RNSQHSLDSN SNSVSVAPLG VSDSKSAGMQ 540 ADGSREQTMI RSRRQMEKKR STAEKHVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ 600 HGISRWPSRK INKVNRSLKK IQTVLESVQG VEGGLKFDPA TGGLVPASSI IQDFDAQQSI 660 FFPCKDVSVK NPNSVFQDAV SVPSTSGIDK ENSMVKMEED SYVDGNQLGQ SNYINTSSFK 720 GGNKSSIPVS GFCYEPKLAA LDAMSSRPAS RTMPLTNSRN ASLGSFHTKE GCRRWGLDND 780 TLDNFECHFT SRCSYSKAAG GDGDTKMKGD NEMDGDGGVI EHNQASSSAM TDSSNGSESM 840 MNGSSSSSRS RGARNHSKVE ANFGDSGSTI TVKATYKEDT TRFKFEPSAG CFQLYEEVAK 900 RFKLQTGTFQ LKYLDDEEEW VMLVNDADLH ECLEILDFVG GRTIKFLVRD TPYAMGSSGS 960 SNCLLGSGS

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence Send to blast

MERGVGFWAS PRGQMEGVVA FDAGARSSNV DDSFNNVMEI MNLDAYTGWC TSPSAAEQMF  60
ASYAAFSQIN SMSQSYAPFE GLSYTEQNTG TFPPMDANMV GSTVCGGEKM MFGQNDEQLH  120
FVVDSTDGVG LVAKRSKNSS QQADDADIGN SMIVRSPSQP LAERMLRALA MFKESSGAGI  180
LAQVWIPMKN KDRYILSTCE QPYLLDQALS GYREVSRKFT FDAETKPGSI PGLPGRVFSS  240
RIPEWTSNVL YYKEAEYLRG GGTFLSLSHE PFCIVVCARL QAVNLRSIAP PRLHSQSLSK  300
NQRAALAEIT DVLRAVCHAH KLPLALTWIP CSVTEGEGDE SIRVLARGCN ASSNEKCVLC  360
AEDTACYASD KEMQGFVHAC MEHYLEEGEG IVGKALQSNH PFFYPDVKEY HISEYPLVHH  420
ARKFGLNAAV AIRLRSTFTG NDDYILEFFL PISMKGSTEQ QLLLNNLSGT MQRICRSLRT  480
VSDAELVGQG ATFGLQDGFA PNLPPITLSR RNSQHSLDSN SNSVSVAPLG VSDSKSAGMQ  540
ADGSREQTMI RSRRQMEKKR STAEKHVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ  600
HGISRWPSRK INKVNRSLKK IQTVLESVQG VEGGLKFDPA TGGLVPASSI IQDFDAQQSI  660
FFPCKDVSVK NPNSVFQDAV SVPSTSGIDK ENSMVKMEED SYVDGNQLGQ SNYINTSSFK  720
GGNKSSIPVS GFCYEPKLAA LDAMSSRPAS RTMPLTNSRN ASLGSFHTKE GCRRWGLDND  780
TLDNFECHFT SRCSYSKAAG GDGDTKMKGD NEMDGDGGVI EHNQASSSAM TDSSNGSESM  840
MNGSSSSSRS RGARNHSKVE ANFGDSGSTI TVKATYKEDT TRFKFEPSAG CFQLYEEVAK  900
RFKLQTGTFQ LKYLDDEEEW VMLVNDADLH ECLEILDFVG GRTIKFLVRD TPYAMGSSGS  960
SNCLLGSGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBank	HG975523	0.0	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016455855.1	0.0	PREDICTED: protein NLP9-like
TrEMBL	A0A1S3YUZ6	0.0	A0A1S3YUZ6_TOBAC; protein NLP9-like
STRING	XP_009588830.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein