PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016455247.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YC
Protein Properties Length: 351aa    MW: 40376.6 Da    PI: 4.653
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016455247.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC112.81.8e-3549150299
           NF-YC   2 lksfwekqie...katdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     l  fw++q+e   +a+++k ++elPlari++++k++++vkm+sa+a vl++ka e+fileltlr+w++ae+ krrtlk+ dia a+ + +  dfl
  XP_016455247.1  49 LLCFWKQQVEeilQASELKrKQELPLARIRRVIKSNDQVKMVSAHAIVLFAKATEMFILELTLRAWMQAEQVKRRTLKRYDIARAIRNEELLDFL 143
                     568*****662225678886789************************************************************************ PP

           NF-YC  93 vdivprd 99 
                      divp +
  XP_016455247.1 144 CDIVPLQ 150
                     ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.68E-2269149IPR009072Histone-fold
PfamPF008085.3E-1570134IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.7E-2972148IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEFPKSSSAL SSEMQKSVAI HSCLPSNNKT QQDEDKREPC FMHLLRAKLL CFWKQQVEEI  60
LQASELKRKQ ELPLARIRRV IKSNDQVKMV SAHAIVLFAK ATEMFILELT LRAWMQAEQV  120
KRRTLKRYDI ARAIRNEELL DFLCDIVPLQ SYKFQVEEAN YGQGNEFHPA YQMVQPINFP  180
NLQYQFQVEE EANDGQGNEF HPAYEMLQLQ PNNIPLQYQF QVEEEALDVR GNEFHQAYQM  240
VQPNNILLQQ QNQFQVEELA NDGQGNEFLV AYQMVQPNDV PYQFQVEEEA NGGQGNQFHP  300
AYQMVQPNSI PASFTSIQGI PAPLMLPPAI NSSAEAKFTN DGFALDNKEG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C9e-264614816118HapE
4g92_C9e-264614816118HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783727.10.0PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1
RefseqXP_009783728.10.0PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1
RefseqXP_009783729.10.0PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1
RefseqXP_009783730.10.0PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1
RefseqXP_009783731.10.0PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1
RefseqXP_009783732.10.0PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1
RefseqXP_009783733.10.0PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1
RefseqXP_009783734.10.0PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1
RefseqXP_016455247.10.0PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X2
TrEMBLA0A1S3YTB40.0A0A1S3YTB4_TOBAC; nuclear transcription factor Y subunit gamma-like isoform X2
TrEMBLA0A1U7X9X80.0A0A1U7X9X8_NICSY; nuclear transcription factor Y subunit gamma-like isoform X1
STRINGXP_009783727.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.23e-33nuclear factor Y, subunit C4