PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016455239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YC | ||||||||
Protein Properties | Length: 351aa MW: 40360.6 Da PI: 4.653 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 113 | 1.5e-35 | 49 | 150 | 2 | 99 |
NF-YC 2 lksfwekqieka...tdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 l fw++q+e++ +++k ++elPlari++++k++++vkm+sa+a vl++ka e+fileltlr+w++ae+ krrtlk+ dia a+ + + dfl XP_016455239.1 49 LLCFWKQQVEETlqaSELKrKQELPLARIRRVIKSNDQVKMVSAHAIVLFAKATEMFILELTLRAWMQAEQVKRRTLKRYDIARAIRNEELLDFL 143 568*****886511167776789************************************************************************ PP NF-YC 93 vdivprd 99 divp + XP_016455239.1 144 CDIVPLQ 150 ****976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.51E-22 | 69 | 149 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.3E-15 | 70 | 134 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 9.7E-29 | 72 | 148 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MEFPKSSSAL SSEMQKPVGI HSCLPSNNKT QQDEDKREPC FMHLLRAKLL CFWKQQVEET 60 LQASELKRKQ ELPLARIRRV IKSNDQVKMV SAHAIVLFAK ATEMFILELT LRAWMQAEQV 120 KRRTLKRYDI ARAIRNEELL DFLCDIVPLQ SYKFQVEEAN YGQGNEFHPA YQMVQPINFP 180 NLQYQFQVEE EANDGQGNEF HPAYEMLQLQ PNNIPLQYQF QVEEEALDVR GNEFHQAYQM 240 VQPNNILLQQ QNQFQVEELA NDGQGNEFLV AYQMVQPNDV PYQFQVEEEA NGGQGNQFHP 300 AYQMVQPNSI PASFTSIQGI PAPLMLPPAI NSSAEAKFTN DGFALDNKEG L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_C | 2e-25 | 46 | 148 | 16 | 118 | HapE |
4g92_C | 2e-25 | 46 | 148 | 16 | 118 | HapE |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016455237.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
Refseq | XP_016455239.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
Refseq | XP_016455240.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
Refseq | XP_016455241.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
Refseq | XP_016455242.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
Refseq | XP_016455243.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
Refseq | XP_016455244.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
Refseq | XP_016455245.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
Refseq | XP_016455246.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
Refseq | XP_016455248.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
TrEMBL | A0A1S3YSN8 | 0.0 | A0A1S3YSN8_TOBAC; nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
STRING | XP_009783727.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 2e-32 | nuclear factor Y, subunit C4 |