PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016455096.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 842aa MW: 93772.8 Da PI: 4.8228 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.2e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_016455096.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 33 | 1.3e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_016455096.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 3.7E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 4.57E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 5.39E-21 | 33 | 107 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.98E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 1.0E-50 | 406 | 625 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYDPNDDPR 120 KLKPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDARQR KRKRRGIDYN AEIPFEKKPP PGFYDVAEED RPVEQPKFPT 240 TIEELEGERR VDKEARLRKQ DIARNKIAER QDAPTAILHA NKLNDPEAVR KRSKLNLPAP 300 QIPDHELEAI AKIGIASDLL GGDELSEGNA ATRALLANYA QTPQHAMTPM RTPQRTPSTK 360 QDAIMMEAEN QRRLTQSQTP LLGGDNPMLH PSDFSGVTPK KREVQTPNPL LTPSATPGAT 420 GLTPRIGMTP SRDSYGMTPK GTPMRDELRI NEEMDMHNNA KLGQFNSKKE LLSGLKSLPQ 480 PKNEYQIVVQ QPHEENEEPP EEKIEEDMSD RIAREKAEEE ARQQALLRKR SKVLQRELPR 540 PPIASLELIR SSLMRADEDK SSFVPPTLIE LADEMIRKEL LSLLEHDNSK YPLDEKAEKE 600 KKKGVKRKVL AEPAIEDFEE DELKEIQCFY VHLTVKIIFG ILXIEADDVP VESSETGQCS 660 NAEEKSASAA PVSSSAIEAD DVAVESSETG QCSNAEEKSA SAAHVSSSAI EADDVPVEAS 720 ETGQCSNAEE KSVSAAHVSS SAIEADDVPV ESSETGQCSN AEEKSASATH DATPLDVEEQ 780 VKVIGDDSTM DAEAISENVP MEGQHIGESN QDVTKTEDSR VADDAQDVTK IEDSVVASDA 840 GN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 632 | 3 | 638 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 632 | 3 | 638 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 632 | 3 | 638 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 632 | 3 | 638 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 632 | 3 | 638 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 632 | 3 | 638 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 632 | 3 | 638 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 632 | 3 | 638 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 632 | 3 | 638 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 632 | 3 | 638 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 632 | 3 | 638 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 632 | 3 | 638 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDARQRKRKRR |
2 | 198 | 204 | QRKRKRR |
3 | 199 | 204 | RKRKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU095496 | 0.0 | EU095496.1 Solanum lycopersicum CDC5-like protein (cdc5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016455096.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A1S3YSB1 | 0.0 | A0A1S3YSB1_TOBAC; cell division cycle 5-like protein | ||||
STRING | XP_009631530.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6139 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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