PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016455001.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 436aa    MW: 47958.4 Da    PI: 6.917
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016455001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-172976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  l d+++++G g+W+++ ++ g+ R++k+c++rw ++l
   XP_016455001.1 29 KGPWTKEEDAVLMDYIRKHGEGNWSAVQKHSGLARCGKSCRLRWANHL 76
                     79******************************************9986 PP
2Myb_DNA-binding43.38.3e-1482125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+ T+eE  ++ ++++++G++ W+ Ia++++ gRt++++k++w++
   XP_016455001.1  82 KGALTPEEVRRINELHAKMGNK-WAQIAAKLP-GRTDNEIKNYWNT 125
                      6788******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3752476IPR017930Myb domain
SuperFamilySSF466891.01E-2926123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-242779IPR009057Homeodomain-like
SMARTSM007177.9E-142878IPR001005SANT/Myb domain
PfamPF002492.2E-152976IPR001005SANT/Myb domain
CDDcd001676.98E-123176No hitNo description
PROSITE profilePS5129424.87277131IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2380129IPR009057Homeodomain-like
SMARTSM007174.3E-1381129IPR001005SANT/Myb domain
PfamPF002491.5E-1282125IPR001005SANT/Myb domain
CDDcd001673.65E-1086125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MTSKVGVGSP SVEEASGGGN TRGGVPLKKG PWTKEEDAVL MDYIRKHGEG NWSAVQKHSG  60
LARCGKSCRL RWANHLRPDL KKGALTPEEV RRINELHAKM GNKWAQIAAK LPGRTDNEIK  120
NYWNTRIKKQ RRVGLQIYPP DICFQAFSEN KQNNELGIFS SANSHPDFLP INDFEIPTVE  180
FKKLEPSQQL YPWALVNIAA SSFFDIPATS LLAQALSSSN TCSGLSTMHP SKRIRGSESW  240
FFGMTDNLFQ ACHQYQNNGS LFAQSLGFSS SYTHNLTSDN HPSFSGEIPG SHAPLNGNSS  300
SSEPKWAKKL ELPSLQIQMA NWGSPSPLPS LESFDTLIQY PPNEHADSGS LSPRNSGLLD  360
AVLYESQTSK ASKHNSHQET SCDVVDDSCP DLQETQWGTY SNPISPLGHS AASVLSEYTP  420
TEVHWMSPPV NSDGGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31241301107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016455000.10.0PREDICTED: transcription factor GAMYB-like isoform X1
TrEMBLA0A1S3YSS00.0A0A1S3YSS0_TOBAC; transcription factor GAMYB-like isoform X1
STRINGXP_009771204.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.15e-77myb domain protein 65