PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016454720.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 465aa    MW: 51419.3 Da    PI: 8.7696
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016454720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17161210155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_016454720.1 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 210
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16161219IPR016177DNA-binding domain
PfamPF008475.3E-9161210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-17162218IPR001471AP2/ERF domain
SMARTSM003802.8E-32162224IPR001471AP2/ERF domain
CDDcd000181.52E-11162220No hitNo description
PROSITE profilePS5103217.794162218IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-6253296IPR016177DNA-binding domain
CDDcd000181.89E-12253296No hitNo description
SMARTSM003802.2E-10254302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MLDLNVSAVS VNSNCDETDP NNNTLFFKDE YSAGTSNTTA SSSVVNAPVA GDEDSNSSSV  60
HHGSKRAHHS LSTLNFSILK SDRAIEIEDD MSTDDVLTRQ LFPVKNESQE QGTRIQGQSQ  120
CWLNLSVPES GGGAEMGIYK PPAPAQQPVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW  180
DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNIT DYEEDMEQMK NLSKEEFVQV  240
LRRQSTGFSR GNSKYRGVTL HKYGRWEARM GQYLGKKAYD KAAIKCNGRE AVTNFEPKSY  300
ERDIKEDNKD GSGQNLDLNL WISPPLAGPK RDEIGRNVHF NFGAREMVIG RRFEIENSST  360
APQGPPTASK LSLLTGVYPG FSPHNMEGAM MKVEATSSPG FPNWAWKIHS QGVVTPVPVF  420
SSSAASSGFS TATTMYPNTL IPPSNQLRLP TKPTFQHPPV TLNIS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454720.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-90RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S3YS000.0A0A1S3YS00_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_009600856.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-86related to AP2.7