PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016454551.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 238aa    MW: 27567.7 Da    PI: 6.0445
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016454551.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-15956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv +vk++G g+W+  a+  g++Rt+k+c++rw +yl
   XP_016454551.1  9 KGPWTEQEDVQLVFYVKMFGDGRWDFLAKVSGLKRTGKSCRLRWVNYL 56
                     79********************************************97 PP
2Myb_DNA-binding55.71.1e-1762107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l ++++ ++G++ W++Ia +++ gRt++++k++w++++
   XP_016454551.1  62 RGKMTPQEEHLVLQLHSKYGNR-WSKIAGKLP-GRTDNEIKNYWRTHM 107
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.848456IPR017930Myb domain
SuperFamilySSF466893.22E-308103IPR009057Homeodomain-like
SMARTSM007171.1E-12858IPR001005SANT/Myb domain
PfamPF002499.0E-14956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-201063IPR009057Homeodomain-like
CDDcd001673.08E-91156No hitNo description
PROSITE profilePS5129426.95957111IPR017930Myb domain
SMARTSM007175.4E-1661109IPR001005SANT/Myb domain
PfamPF002492.9E-1662106IPR001005SANT/Myb domain
CDDcd001677.11E-1164107No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2464110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVQEEIIRKG PWTEQEDVQL VFYVKMFGDG RWDFLAKVSG LKRTGKSCRL RWVNYLNPAL  60
KRGKMTPQEE HLVLQLHSKY GNRWSKIAGK LPGRTDNEIK NYWRTHMRKQ AQDQRNKNKA  120
SISPSSSFSN SSSNSSANSP TVDSMPVNEQ NERNSNDGLE HLQLAAGENT VYDHESGEKN  180
MMVYSIDEIW KEVESSEDTD QTMNKLPVMA SPLWDYCPDT LWMTDYYYDN QDISFFTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2891114105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0130445e-38BT013044.1 Lycopersicon esculentum clone 114294R, mRNA sequence.
GenBankHG9754455e-38HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755185e-38HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454551.11e-180PREDICTED: transcription factor MYB48-like
SwissprotQ9LX821e-69MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1S3YQR21e-179A0A1S3YQR2_TOBAC; transcription factor MYB48-like
STRINGXP_009798979.11e-179(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-69myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]