PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016454529.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 411aa    MW: 46467.9 Da    PI: 8.4428
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016454529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18244292355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa  ++ a+  l+g
  XP_016454529.1 244 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAISYDTAAYMLRG 292
                     8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.98E-30242302No hitNo description
SMARTSM003803.8E-36243306IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-21243301IPR016177DNA-binding domain
PROSITE profilePS5103222.115243300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-30243301IPR001471AP2/ERF domain
PRINTSPR003673.3E-10244255IPR001471AP2/ERF domain
PfamPF008473.6E-12244292IPR001471AP2/ERF domain
PRINTSPR003673.3E-10266282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MENQSPKSES YMQKELPTCY KEVAIESLSR YFKNPHILEG LNDESSVTSF PNMKERLVSS  60
SDSTSSTKFS VFFPLNFLQN DLGNNNIFPL NNFLESFHHH NQVSDHQTCS SPNSLSSNYP  120
TLGLFLQEPS ILEISKRAEE SLNNKSHKTS VAIFPMSSLD ESQIHQQQQV AATTSTTNWL  180
KMNQTLTNCT TTRGFSDYWL STTKTQPMKF TTGSRKSSLH YNRGNQKSSF SSSSLIATSQ  240
GKLFRGVRQR HWGKWVAEIR LPRNRTRVWL GTFDTAEEAA ISYDTAAYML RGDYAHLNFP  300
HLKNQLKANS INGNTAALLE AKIRAISSQT KKTNDQDQST KEVLLATDDS TSKIKNVITQ  360
NQEMDNSEKK VKNINQERLL SENNIDGVQL SRMPSLDMDM IWDALLVSDS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21239310168ATERF1
3gcc_A3e-21239310168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607801.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
RefseqXP_016454529.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A1S3YQN90.0A0A1S3YQN9_TOBAC; ethylene-responsive transcription factor ERF062-like
STRINGXP_009607801.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA109211825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-70ERF family protein