PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016454360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 303aa MW: 32982.6 Da PI: 8.9499 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.6e-20 | 93 | 142 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa+ ++aa+++++g XP_016454360.1 93 HYRGVRKRP-WGRYAAEIRDpFK----KTRVWLGTFDTPEEAARTYDAAAREFHG 142 69*******.**********662....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.62E-32 | 93 | 149 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.7E-30 | 93 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-35 | 93 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-21 | 93 | 150 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.1E-13 | 93 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 93 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 94 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 116 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MMTDNGQNNR RKRVRNNRQQ NTNAAFFIAF SFQEGGGYLF SYIPFFTLFA QLYTTSLSIL 60 HFQMAQNVMG DAAVTVAVPA AENMNGGVSD EIHYRGVRKR PWGRYAAEIR DPFKKTRVWL 120 GTFDTPEEAA RTYDAAAREF HGTKAKTNFL PPTVIKDSSP APLNLNLGGG SSVGSAGSFT 180 YLKQNNLNLG GGSSVGSAAS FTYLKQNHQF RHFPAARGSA PPSARDYQYL EALTGAEVSH 240 HDPSSQRGTV AFLGGGDSVS GCGIRTESES SSVLNYNFND VNQPTITANC LNLDLNLPPP 300 DNM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 93 | 149 | 5 | 62 | ATERF1 |
3gcc_A | 2e-17 | 93 | 149 | 5 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB669083 | 0.0 | AB669083.1 Nicotiana tabacum NtERF#206 gene for ethylene response factor #206, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803314.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 12-like | ||||
Refseq | XP_016454360.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 12-like | ||||
TrEMBL | A0A1S3YQW1 | 0.0 | A0A1S3YQW1_TOBAC; ethylene-responsive transcription factor 12-like | ||||
TrEMBL | A0A1U7YVV0 | 0.0 | A0A1U7YVV0_NICSY; ethylene-responsive transcription factor 12-like | ||||
STRING | XP_009803314.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15195 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15210.1 | 2e-32 | ethylene responsive element binding factor 4 |