PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016454265.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 445aa MW: 48740.4 Da PI: 7.2878

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016454265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.7e-39	94	153	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s XP_016454265.1 94 PDKTLPCPRCNSMETKFCYFNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKNS 153 7899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-29	91	151	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-31	96	152	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	98	152	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	100	136	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MSEAIANKDP AIKLFGRTIQ LPHFPAAFPA DTGDYSSSAG EDELEHKDRN PIPENSEIIE 60 ESPSYNDCST AKTSKSEVEQ AETSNSQEKI LKKPDKTLPC PRCNSMETKF CYFNNYNVSQ 120 PRHFCKNCQR YWTAGGTMRN VPVGAGRRKH KNSVLHYRHI SISETLTDLS NGVQPPPLKL 180 NGTILAFDTD KPLRESMGSV LNIADKAMQN CSGNGFHRYK ELGIQAGDNG DDHSDGSSVT 240 ALSSKDSDNG SPDMPRQNCN SFSPHLPCFT GAPWPYPWSS VHLSNAVPPP GYYLPGFPMP 300 FVPAYWGCAI PGSWNVPWMS PPTASQNQMP PTSSPNSPTL GKHPRDEIIL KSVGSEEEPR 360 KESNPREKCL WFPKTLRIGD PGEAAKSSIW ATLGIKHGAV DSVSGGSFKA LLPKSDERNR 420 VSENSSILKA NPAAMSRSLN FNESS

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MSEAIANKDP AIKLFGRTIQ LPHFPAAFPA DTGDYSSSAG EDELEHKDRN PIPENSEIIE  60
ESPSYNDCST AKTSKSEVEQ AETSNSQEKI LKKPDKTLPC PRCNSMETKF CYFNNYNVSQ  120
PRHFCKNCQR YWTAGGTMRN VPVGAGRRKH KNSVLHYRHI SISETLTDLS NGVQPPPLKL  180
NGTILAFDTD KPLRESMGSV LNIADKAMQN CSGNGFHRYK ELGIQAGDNG DDHSDGSSVT  240
ALSSKDSDNG SPDMPRQNCN SFSPHLPCFT GAPWPYPWSS VHLSNAVPPP GYYLPGFPMP  300
FVPAYWGCAI PGSWNVPWMS PPTASQNQMP PTSSPNSPTL GKHPRDEIIL KSVGSEEEPR  360
KESNPREKCL WFPKTLRIGD PGEAAKSSIW ATLGIKHGAV DSVSGGSFKA LLPKSDERNR  420
VSENSSILKA NPAAMSRSLN FNESS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016454265.1	0.0	PREDICTED: cyclic dof factor 3-like isoform X2
TrEMBL	A0A1S3YQL3	0.0	A0A1S3YQL3_TOBAC; cyclic dof factor 3-like isoform X2
STRING	XP_009621215.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	9e-87	cycling DOF factor 2