PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016454264.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 464aa MW: 50773.7 Da PI: 6.6185

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016454264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	5e-39	113	172	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s XP_016454264.1 113 PDKTLPCPRCNSMETKFCYFNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKNS 172 7899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	110	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	115	171	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	117	171	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	119	155	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MSEAIANKDP AIKLFGRTIQ LPHFPAAFPA DTGDYSSSAG EDELEHKGQC DDCTDENEHL 60 IAGELQDRNP IPENSEIIEE SPSYNDCSTA KTSKSEVEQA ETSNSQEKIL KKPDKTLPCP 120 RCNSMETKFC YFNNYNVSQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKHK NSVLHYRHIS 180 ISETLTDLSN GVQPPPLKLN GTILAFDTDK PLRESMGSVL NIADKAMQNC SGNGFHRYKE 240 LGIQAGDNGD DHSDGSSVTA LSSKDSDNGS PDMPRQNCNS FSPHLPCFTG APWPYPWSSV 300 HLSNAVPPPG YYLPGFPMPF VPAYWGCAIP GSWNVPWMSP PTASQNQMPP TSSPNSPTLG 360 KHPRDEIILK SVGSEEEPRK ESNPREKCLW FPKTLRIGDP GEAAKSSIWA TLGIKHGAVD 420 SVSGGSFKAL LPKSDERNRV SENSSILKAN PAAMSRIQHA VPPP

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MSEAIANKDP AIKLFGRTIQ LPHFPAAFPA DTGDYSSSAG EDELEHKGQC DDCTDENEHL  60
IAGELQDRNP IPENSEIIEE SPSYNDCSTA KTSKSEVEQA ETSNSQEKIL KKPDKTLPCP  120
RCNSMETKFC YFNNYNVSQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKHK NSVLHYRHIS  180
ISETLTDLSN GVQPPPLKLN GTILAFDTDK PLRESMGSVL NIADKAMQNC SGNGFHRYKE  240
LGIQAGDNGD DHSDGSSVTA LSSKDSDNGS PDMPRQNCNS FSPHLPCFTG APWPYPWSSV  300
HLSNAVPPPG YYLPGFPMPF VPAYWGCAIP GSWNVPWMSP PTASQNQMPP TSSPNSPTLG  360
KHPRDEIILK SVGSEEEPRK ESNPREKCLW FPKTLRIGDP GEAAKSSIWA TLGIKHGAVD  420
SVSGGSFKAL LPKSDERNRV SENSSILKAN PAAMSRIQHA VPPP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016454264.1	0.0	PREDICTED: cyclic dof factor 3-like isoform X1
TrEMBL	A0A1S3YPX0	0.0	A0A1S3YPX0_TOBAC; cyclic dof factor 3-like isoform X1
STRING	XP_009621215.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-83	cycling DOF factor 2