PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016453659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 290aa MW: 30810.3 Da PI: 7.8086 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67 | 3.7e-21 | 25 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdps+ + r++lg+f+taeeAa+a++aa+++++g XP_016453659.1 25 HYRGVRKRP-WGRYAAEIRDPSK---KSRVWLGTFDTAEEAARAYDAAAREFRG 74 6********.**********965...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.15E-20 | 25 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-33 | 25 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.487 | 25 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-42 | 25 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-14 | 25 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-23 | 25 | 83 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.1E-11 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MAMKEKLNGG LKGGNVKTNG VKEVHYRGVR KRPWGRYAAE IRDPSKKSRV WLGTFDTAEE 60 AARAYDAAAR EFRGPKAKTN FPLPSENQCP SNSSGPTESS SGETGVHAPH APSELDLTRP 120 LGTVAVGVDH GGCKSEVGSV RNGFPIFHHQ PVMGALTSDN SGLAESSSGE TGVHAPLELD 180 LTRHLGAVGE GGNHVRNGFP IFHQQPTVAV LPNGQPILLF DNNFVPTGVL NRPKPYRFEP 240 VAVEFNGVSG RVVHSDSSSS TAANENYYGG GGGARRELNL DLNLAPPMEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 25 | 83 | 5 | 64 | ATERF1 |
3gcc_A | 1e-21 | 25 | 83 | 5 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ617031 | 2e-34 | AJ617031.1 Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np193. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016453659.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 5e-80 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A1S3YN20 | 0.0 | A0A1S3YN20_TOBAC; ethylene-responsive transcription factor 4-like | ||||
STRING | XP_009769304.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 6e-23 | erf domain protein 9 |