PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016453551.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 388aa MW: 41346.5 Da PI: 9.7218

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016453551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.7e-39	77	137	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+alkcprC+s+ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+sss XP_016453551.1 77 ETALKCPRCESSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSS 137 6789*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-33	60	129	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-32	79	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.571	80	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	82	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MVFSSIPAYL DPANWQQQTG GNIPNHYQLT SPLSQTATPP PLPPPPPPQP HGGGGAGSIR 60 PGSMADRARL ANVPMPETAL KCPRCESSNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL 120 RNVPVGGGCR RNKRSSSKSS NNNNNNASKS PASSTSTDGR QAANNNSGST STISSHSNSF 180 SGPTSSASLL GLMSPQIPPL RFMSPLGQLT DHHHFSTPGN NMNLNFSTSG NVLGGTSEGM 240 MVNNNNLLGA AGGGGVASLL SSVNVEHWRM QQQQQQQMAQ QFPNFFGGFD PSNSPSGINN 300 YQFQGGVNEA VQFLGGNEST TSQIRPKIST SMLNQMASVK MEDNNHNQDQ SALSRQLLGI 360 QGNENWNTAS AWSDLSASFS SSSTSNAL

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MVFSSIPAYL DPANWQQQTG GNIPNHYQLT SPLSQTATPP PLPPPPPPQP HGGGGAGSIR  60
PGSMADRARL ANVPMPETAL KCPRCESSNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL  120
RNVPVGGGCR RNKRSSSKSS NNNNNNASKS PASSTSTDGR QAANNNSGST STISSHSNSF  180
SGPTSSASLL GLMSPQIPPL RFMSPLGQLT DHHHFSTPGN NMNLNFSTSG NVLGGTSEGM  240
MVNNNNLLGA AGGGGVASLL SSVNVEHWRM QQQQQQQMAQ QFPNFFGGFD PSNSPSGINN  300
YQFQGGVNEA VQFLGGNEST TSQIRPKIST SMLNQMASVK MEDNNHNQDQ SALSRQLLGI  360
QGNENWNTAS AWSDLSASFS SSSTSNAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	7e-57	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016453551.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1S3YMN8	0.0	A0A1S3YMN8_TOBAC; dof zinc finger protein DOF2.4-like
STRING	XP_009628547.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	4e-47	DNA binding with one finger 2.4