PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453189.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 270aa    MW: 30620 Da    PI: 4.8494
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453189.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.6e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++ ++ G+g +W + +++ g++R++k+c++rw++yl
   XP_016453189.1 14 RGPWSPEEDNTLKNYLEKNGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding452.5e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eEd +++ +  q G++ W+ Ia+ ++ gRt++++k++w++
   XP_016453189.1  69 GSFTEEEDNIILTLYGQIGSR-WSVIAANLQ-GRTDNDVKNHWNT 111
                      79*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.523962IPR017930Myb domain
SuperFamilySSF466897.03E-2712109IPR009057Homeodomain-like
SMARTSM007177.8E-111364IPR001005SANT/Myb domain
PfamPF002499.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-231569IPR009057Homeodomain-like
CDDcd001675.37E-81662No hitNo description
PROSITE profilePS5129423.71263117IPR017930Myb domain
SMARTSM007174.4E-1367115IPR001005SANT/Myb domain
PfamPF002498.6E-1369111IPR001005SANT/Myb domain
CDDcd001675.62E-1070113No hitNo description
Gene3DG3DSA:1.10.10.609.8E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRAPCCDKS KVKRGPWSPE EDNTLKNYLE KNGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPDIKHGS FTEEEDNIIL TLYGQIGSRW SVIAANLQGR TDNDVKNHWN TKLKKKLLAA  120
ENYTNLSSYN SSDLNHNFSI NSFSRNYSTM DSNTFTSLMD PNLTNLNLVV PEMLVQESDQ  180
LFPLQSLLEI QENGAIQLAQ DQEDGYVMDF STGISSSYNY DLVNGFDFQE KFIGADDTNY  240
SSSFSNYSTL VQLQAHNIPD IDQTFKGFEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754516e-41HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755246e-41HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799606.10.0PREDICTED: transcription factor RAX2-like
RefseqXP_016453189.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A1S3YLQ20.0A0A1S3YLQ2_TOBAC; transcription factor RAX2-like
TrEMBLA0A1U7YCC40.0A0A1U7YCC4_NICSY; transcription factor RAX2-like
STRINGXP_009799606.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-74MYB family protein