PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016452762.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 601aa    MW: 65730.7 Da    PI: 4.7116
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016452762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.33.7e-1082336002373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + LlecA+ +++++ e+a + L rl+e +s++gdp++R+ +yf eAL +rl+ +++++ +++ + + +     e + ++k+f++++P+ kf+hl
  XP_016452762.1 233 LKSLLECAR-LADSEPENAVKSLIRLKESVSQQGDPTERVGFYFFEALYSRLSFQTDNIPSIFGTCTPE-----ELTLSYKAFNDACPYSKFAHL 321
                     578******.566689999999********************************999999999766665.....78899**************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIlea+e++ r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s   g   + +l +tg+rL++fA+ l+++fef++ + + +++
  XP_016452762.1 322 TANQAILEATEKAMRIHIVDFGIVHGIQWAAFLQALATRSAGKPvSIRISGIPSVVLGnsPAASLLATGNRLRDFAKLLDLKFEFEP-ILTPVQE 415
                     ****************************************88777*********877788999************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++r++p+E+laVn++lql++llde+    +   + L+l ksl+P +v++ e e+++n+  Fl+rf++al+yys++f+sl+ +l ++s er+
  XP_016452762.1 416 LNESSFRIDPDETLAVNFMLQLYNLLDETSVGVK---TALNLAKSLNPSIVTLGEYEVSLNNVGFLQRFSNALNYYSTIFESLDPSLTQDSPERV 507
                     **************************88777666...9********************************************************* PP

            GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                      vEr +lgr+i  +v + +a  rre +e +e+W+e +e aGFk+v+ls++a++qak ll +++ s  y + ++   ++ l W+d+pL++vS+W
  XP_016452762.1 508 QVERLILGRRIAGAVGTDEAGiRRECMEDKEHWKELMEGAGFKEVTLSHYAMSQAKILLWNYNySSSYGLIDSPPGFLsLAWNDKPLLTVSSW 600
                     ***************9999888*****************************************9999998877665555************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.271206579IPR005202Transcription factor GRAS
PfamPF035141.3E-105233600IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MAAYMCTDSG NLMAIAQQVI KQKQQQEQLQ QQEQQQHQQF LGGVNPLCLS PWTGTHQSLT  60
NSPTLGYGGL TGGPGFTDPF QVVAGGTDGG EPGFQFPNLE HHSTGFRFTD FSGGPGGEFD  120
SDEWMESLIG GGDSTGSSNL QSSSYAWHTS SEFAALYGDP FSSCPNRLSI ASSPPPTSDL  180
NGVIFSETQK NLNPLQPWVP PSSSPPVVHK ESKVASGDVH CSSPETFSSK PLLKSLLECA  240
RLADSEPENA VKSLIRLKES VSQQGDPTER VGFYFFEALY SRLSFQTDNI PSIFGTCTPE  300
ELTLSYKAFN DACPYSKFAH LTANQAILEA TEKAMRIHIV DFGIVHGIQW AAFLQALATR  360
SAGKPVSIRI SGIPSVVLGN SPAASLLATG NRLRDFAKLL DLKFEFEPIL TPVQELNESS  420
FRIDPDETLA VNFMLQLYNL LDETSVGVKT ALNLAKSLNP SIVTLGEYEV SLNNVGFLQR  480
FSNALNYYST IFESLDPSLT QDSPERVQVE RLILGRRIAG AVGTDEAGIR RECMEDKEHW  540
KELMEGAGFK EVTLSHYAMS QAKILLWNYN YSSSYGLIDS PPGFLSLAWN DKPLLTVSSW  600
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1512296011375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016452762.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1S3YLC20.0A0A1S3YLC2_TOBAC; scarecrow-like protein 4
STRINGXP_009794663.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein