PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016452762.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 601aa MW: 65730.7 Da PI: 4.7116 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 353.3 | 3.7e-108 | 233 | 600 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + LlecA+ +++++ e+a + L rl+e +s++gdp++R+ +yf eAL +rl+ +++++ +++ + + + e + ++k+f++++P+ kf+hl XP_016452762.1 233 LKSLLECAR-LADSEPENAVKSLIRLKESVSQQGDPTERVGFYFFEALYSRLSFQTDNIPSIFGTCTPE-----ELTLSYKAFNDACPYSKFAHL 321 578******.566689999999********************************999999999766665.....78899**************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 taNqaIlea+e++ r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s g + +l +tg+rL++fA+ l+++fef++ + + +++ XP_016452762.1 322 TANQAILEATEKAMRIHIVDFGIVHGIQWAAFLQALATRSAGKPvSIRISGIPSVVLGnsPAASLLATGNRLRDFAKLLDLKFEFEP-ILTPVQE 415 ****************************************88777*********877788999************************.799**** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 l+ +++r++p+E+laVn++lql++llde+ + + L+l ksl+P +v++ e e+++n+ Fl+rf++al+yys++f+sl+ +l ++s er+ XP_016452762.1 416 LNESSFRIDPDETLAVNFMLQLYNLLDETSVGVK---TALNLAKSLNPSIVTLGEYEVSLNNVGFLQRFSNALNYYSTIFESLDPSLTQDSPERV 507 **************************88777666...9********************************************************* PP GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373 vEr +lgr+i +v + +a rre +e +e+W+e +e aGFk+v+ls++a++qak ll +++ s y + ++ ++ l W+d+pL++vS+W XP_016452762.1 508 QVERLILGRRIAGAVGTDEAGiRRECMEDKEHWKELMEGAGFKEVTLSHYAMSQAKILLWNYNySSSYGLIDSPPGFLsLAWNDKPLLTVSSW 600 ***************9999888*****************************************9999998877665555************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.271 | 206 | 579 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-105 | 233 | 600 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MAAYMCTDSG NLMAIAQQVI KQKQQQEQLQ QQEQQQHQQF LGGVNPLCLS PWTGTHQSLT 60 NSPTLGYGGL TGGPGFTDPF QVVAGGTDGG EPGFQFPNLE HHSTGFRFTD FSGGPGGEFD 120 SDEWMESLIG GGDSTGSSNL QSSSYAWHTS SEFAALYGDP FSSCPNRLSI ASSPPPTSDL 180 NGVIFSETQK NLNPLQPWVP PSSSPPVVHK ESKVASGDVH CSSPETFSSK PLLKSLLECA 240 RLADSEPENA VKSLIRLKES VSQQGDPTER VGFYFFEALY SRLSFQTDNI PSIFGTCTPE 300 ELTLSYKAFN DACPYSKFAH LTANQAILEA TEKAMRIHIV DFGIVHGIQW AAFLQALATR 360 SAGKPVSIRI SGIPSVVLGN SPAASLLATG NRLRDFAKLL DLKFEFEPIL TPVQELNESS 420 FRIDPDETLA VNFMLQLYNL LDETSVGVKT ALNLAKSLNP SIVTLGEYEV SLNNVGFLQR 480 FSNALNYYST IFESLDPSLT QDSPERVQVE RLILGRRIAG AVGTDEAGIR RECMEDKEHW 540 KELMEGAGFK EVTLSHYAMS QAKILLWNYN YSSSYGLIDS PPGFLSLAWN DKPLLTVSSW 600 H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-151 | 229 | 601 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016452762.1 | 0.0 | PREDICTED: scarecrow-like protein 4 | ||||
Swissprot | A0A024B7I0 | 0.0 | SCL7_POPEU; SCARECROW-LIKE protein 7 | ||||
TrEMBL | A0A1S3YLC2 | 0.0 | A0A1S3YLC2_TOBAC; scarecrow-like protein 4 | ||||
STRING | XP_009794663.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8905 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 0.0 | GRAS family protein |