PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016452745.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 904aa MW: 100648 Da PI: 5.3349

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016452745.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.8e-29	530	581	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki ++ XP_016452745.1 530 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGIPRWPSRKIGKV 581 5899*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.961	514	601	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-25	534	581	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.56E-20	801	887	No hit	No description
PROSITE profile	PS51745	20.653	803	885	IPR000270	PB1 domain
SMART	SM00666	4.4E-22	803	885	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.7E-22	803	884	No hit	No description
Pfam	PF00564	2.4E-17	804	884	IPR000270	PB1 domain
CDD	cd06407	1.94E-30	804	884	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 904 aa Download sequence Send to blast
MEGIVSFDGG TMSSHIDETF NNAMEMMNFE AYAGWCSSPH AIEQIFASYP SFSPINPMSI 60 NYAPFEQLNY EQQFPCEGEN WMFQQKNDDQ FRDEADYVTD TDNCIIPKSP CQSLSERMLK 120 ALELFKESSG GGILAQVWIP MKNSDAHYIL STCEQPFLLD QVLSGYREVS RKFTFDVEMK 180 PGSFPGLPGR VFTSRIPEWT SNVQYYKEAE YLRVQYAVDH EVRGSIALPV LEDDGHDSSC 240 CAVLELVTTK EKSNFDLEMA VNLRSITPPQ FTSQNLSKNQ RAALAEIKDV LRAVCHAHSL 300 PLALTWIPRI CTGGCIASSD EKRILCVENT VCYVSDKEMH GFVHACMGHD LEEGQGIVGK 360 SLQSNHPFFY PDVKEYHISE YPLVHHARKF GLNAAVAIRL RSIFTGDDDY VLEFFLPVDK 420 KGSTEQQLLL NNLSRTMQRI CKSLRTISDA ELVGQGGAKF GLQSESVLDL TSIDLSRKIS 480 EHPLLGSTLD FSKETLDICD SEIAGMEADG SREQTRSVSR RQKEKKRSVA EKHVSLSVLQ 540 QYFSGSLKDA AKSIGVCPTT LKRICRQHGI PRWPSRKIGK VNRSLVKIQT VLKSVQGIEG 600 GFKFDPATGG LVATSSILQD FDSEKGILFP CKNVCVKNPD SLFQDDVSVL QTSCIDNHDP 660 VVKMEEDTHV DGNQLAEWPA SQDTMQCTNS RNVSLGSFRT KEGCRSCGLS TSNLKLDNSG 720 YHFINRCPHS MPDADDVKTK TRASNELDGD DVVMEHNKGS SSGMTDLSNV SGSIMNGSSS 780 SSHSFGERKH TKVKARSEDG ASHITIKATY KEDRIRFKFE PSAGCFQLYE EVAKRFKLQT 840 GAFQLEYLDD EEEWVMLVNE EDLHECLEIL DSLGTRCVKF LVQDVSCAIG SSGSSTSCFL 900 TSGS

Sequence ? help Back to Top

Protein Sequence Length: 904 aa Download sequence Send to blast

MEGIVSFDGG TMSSHIDETF NNAMEMMNFE AYAGWCSSPH AIEQIFASYP SFSPINPMSI  60
NYAPFEQLNY EQQFPCEGEN WMFQQKNDDQ FRDEADYVTD TDNCIIPKSP CQSLSERMLK  120
ALELFKESSG GGILAQVWIP MKNSDAHYIL STCEQPFLLD QVLSGYREVS RKFTFDVEMK  180
PGSFPGLPGR VFTSRIPEWT SNVQYYKEAE YLRVQYAVDH EVRGSIALPV LEDDGHDSSC  240
CAVLELVTTK EKSNFDLEMA VNLRSITPPQ FTSQNLSKNQ RAALAEIKDV LRAVCHAHSL  300
PLALTWIPRI CTGGCIASSD EKRILCVENT VCYVSDKEMH GFVHACMGHD LEEGQGIVGK  360
SLQSNHPFFY PDVKEYHISE YPLVHHARKF GLNAAVAIRL RSIFTGDDDY VLEFFLPVDK  420
KGSTEQQLLL NNLSRTMQRI CKSLRTISDA ELVGQGGAKF GLQSESVLDL TSIDLSRKIS  480
EHPLLGSTLD FSKETLDICD SEIAGMEADG SREQTRSVSR RQKEKKRSVA EKHVSLSVLQ  540
QYFSGSLKDA AKSIGVCPTT LKRICRQHGI PRWPSRKIGK VNRSLVKIQT VLKSVQGIEG  600
GFKFDPATGG LVATSSILQD FDSEKGILFP CKNVCVKNPD SLFQDDVSVL QTSCIDNHDP  660
VVKMEEDTHV DGNQLAEWPA SQDTMQCTNS RNVSLGSFRT KEGCRSCGLS TSNLKLDNSG  720
YHFINRCPHS MPDADDVKTK TRASNELDGD DVVMEHNKGS SSGMTDLSNV SGSIMNGSSS  780
SSHSFGERKH TKVKARSEDG ASHITIKATY KEDRIRFKFE PSAGCFQLYE EVAKRFKLQT  840
GAFQLEYLDD EEEWVMLVNE EDLHECLEIL DSLGTRCVKF LVQDVSCAIG SSGSSTSCFL  900
TSGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016452745.1	0.0	PREDICTED: protein NLP9-like isoform X2
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1S3YKX0	0.0	A0A1S3YKX0_TOBAC; protein NLP9-like isoform X2
STRING	XP_009800914.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]