PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016452744.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 912aa MW: 101555 Da PI: 5.4619

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016452744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.9e-29	538	589	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki ++ XP_016452744.1 538 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGIPRWPSRKIGKV 589 5899*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.961	522	609	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-25	542	589	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.56E-20	809	895	No hit	No description
PROSITE profile	PS51745	20.653	811	893	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.7E-22	811	892	No hit	No description
SMART	SM00666	4.4E-22	811	893	IPR000270	PB1 domain
CDD	cd06407	2.12E-30	812	892	No hit	No description
Pfam	PF00564	2.4E-17	812	892	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence Send to blast
MEGIVSFDGG TMSSHIDETF NNAMEMMNFE AYAGWCSSPH AIEQIFASYP SFSPINPMSI 60 NYAPFEQLNY EQQFPCEGEN WMFQQKNDDQ FRDEADYVTD TDNCIIPKSP CQSLSERMLK 120 ALELFKESSG GGILAQVWIP MKNSDAHYIL STCEQPFLLD QVLSGYREVS RKFTFDVEMK 180 PGSFPGLPGR VFTSRIPEWT SNVQYYKEAE YLRVQYAVDH EVRGSIALPV LEDDGHDSSC 240 CAVLELVTTK EKSNFDLEMV HVCRALQAVN LRSITPPQFT SQNLSKNQRA ALAEIKDVLR 300 AVCHAHSLPL ALTWIPRICT GGCIASSDEK RILCVENTVC YVSDKEMHGF VHACMGHDLE 360 EGQGIVGKSL QSNHPFFYPD VKEYHISEYP LVHHARKFGL NAAVAIRLRS IFTGDDDYVL 420 EFFLPVDKKG STEQQLLLNN LSRTMQRICK SLRTISDAEL VGQGGAKFGL QSESVLDLTS 480 IDLSRKISEH PLLGSTLDFS KETLDICDSE IAGMEADGSR EQTRSVSRRQ KEKKRSVAEK 540 HVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGIPR WPSRKIGKVN RSLVKIQTVL 600 KSVQGIEGGF KFDPATGGLV ATSSILQDFD SEKGILFPCK NVCVKNPDSL FQDDVSVLQT 660 SCIDNHDPVV KMEEDTHVDG NQLAEWPASQ DTMQCTNSRN VSLGSFRTKE GCRSCGLSTS 720 NLKLDNSGYH FINRCPHSMP DADDVKTKTR ASNELDGDDV VMEHNKGSSS GMTDLSNVSG 780 SIMNGSSSSS HSFGERKHTK VKARSEDGAS HITIKATYKE DRIRFKFEPS AGCFQLYEEV 840 AKRFKLQTGA FQLEYLDDEE EWVMLVNEED LHECLEILDS LGTRCVKFLV QDVSCAIGSS 900 GSSTSCFLTS GS

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence Send to blast

MEGIVSFDGG TMSSHIDETF NNAMEMMNFE AYAGWCSSPH AIEQIFASYP SFSPINPMSI  60
NYAPFEQLNY EQQFPCEGEN WMFQQKNDDQ FRDEADYVTD TDNCIIPKSP CQSLSERMLK  120
ALELFKESSG GGILAQVWIP MKNSDAHYIL STCEQPFLLD QVLSGYREVS RKFTFDVEMK  180
PGSFPGLPGR VFTSRIPEWT SNVQYYKEAE YLRVQYAVDH EVRGSIALPV LEDDGHDSSC  240
CAVLELVTTK EKSNFDLEMV HVCRALQAVN LRSITPPQFT SQNLSKNQRA ALAEIKDVLR  300
AVCHAHSLPL ALTWIPRICT GGCIASSDEK RILCVENTVC YVSDKEMHGF VHACMGHDLE  360
EGQGIVGKSL QSNHPFFYPD VKEYHISEYP LVHHARKFGL NAAVAIRLRS IFTGDDDYVL  420
EFFLPVDKKG STEQQLLLNN LSRTMQRICK SLRTISDAEL VGQGGAKFGL QSESVLDLTS  480
IDLSRKISEH PLLGSTLDFS KETLDICDSE IAGMEADGSR EQTRSVSRRQ KEKKRSVAEK  540
HVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGIPR WPSRKIGKVN RSLVKIQTVL  600
KSVQGIEGGF KFDPATGGLV ATSSILQDFD SEKGILFPCK NVCVKNPDSL FQDDVSVLQT  660
SCIDNHDPVV KMEEDTHVDG NQLAEWPASQ DTMQCTNSRN VSLGSFRTKE GCRSCGLSTS  720
NLKLDNSGYH FINRCPHSMP DADDVKTKTR ASNELDGDDV VMEHNKGSSS GMTDLSNVSG  780
SIMNGSSSSS HSFGERKHTK VKARSEDGAS HITIKATYKE DRIRFKFEPS AGCFQLYEEV  840
AKRFKLQTGA FQLEYLDDEE EWVMLVNEED LHECLEILDS LGTRCVKFLV QDVSCAIGSS  900
GSSTSCFLTS GS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016452744.1	0.0	PREDICTED: protein NLP9-like isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1S3YKH6	0.0	A0A1S3YKH6_TOBAC; protein NLP9-like isoform X1
STRING	XP_009800914.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]