PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016452316.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 272aa MW: 29487.8 Da PI: 9.4073

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016452316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.1e-39	35	95	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn+k+s XP_016452316.1 35 KDQAINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNNKRS 95 5799*****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	23	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.7E-33	36	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.779	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
METTQWTQDI GIVKSMAAEI APPNITVEKK ARPVKDQAIN CPRCNSTNTK FCYYNNYSLT 60 QPRYFCKTCR RYWTEGGTLR NVPVGGGSRK NNKRSTSSSS SSLSQKLPDL NPNPGFSPQN 120 PNKIIVGSSQ DLNLGFHSTM SHDHHQFHGV PQFLELPKMD SGNNGNNHLG STPISALELL 180 RTGIASRGFT SFISSPAPPD LNTLYTSGFP FQELKPSASS NNHAAAALSY STGVQENGGA 240 RIMFPLGADH QSKGQENSTA GFWNGMLGGG SW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009607389.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
Refseq	XP_016452316.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
Refseq	XP_018628088.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
TrEMBL	A0A1S3YJ94	0.0	A0A1S3YJ94_TOBAC; dof zinc finger protein DOF2.5-like isoform X2
STRING	XP_009607388.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-53	Dof family protein