PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016452315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 314aa MW: 34279.7 Da PI: 9.894 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.9 | 5.3e-39 | 77 | 137 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn+k+s XP_016452315.1 77 KDQAINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNNKRS 137 5799*****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 65 | 129 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.7E-33 | 78 | 135 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.779 | 81 | 135 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 83 | 119 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MLNFNILSLN FLNLSYHPFI FQIKVVILFT HQSSALFLSA PFHMIAYGKK DIGIVKSMAA 60 EIAPPNITVE KKARPVKDQA INCPRCNSTN TKFCYYNNYS LTQPRYFCKT CRRYWTEGGT 120 LRNVPVGGGS RKNNKRSTSS SSSSLSQKLP DLNPNPGFSP QNPNKIIVGS SQDLNLGFHS 180 TMSHDHHQFH GVPQFLELPK MDSGNNGNNH LGSTPISALE LLRTGIASRG FTSFISSPAP 240 PDLNTLYTSG FPFQELKPSA SSNNHAAAAL SYSTGVQENG GARIMFPLGA DHQSKGQENS 300 TAGFWNGMLG GGSW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607388.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5-like isoform X1 | ||||
Refseq | XP_016452315.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5-like isoform X1 | ||||
TrEMBL | A0A1S3YJN1 | 0.0 | A0A1S3YJN1_TOBAC; dof zinc finger protein DOF2.5-like isoform X1 | ||||
STRING | XP_009607388.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 1e-52 | Dof family protein |