PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016452272.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 182aa    MW: 20868.5 Da    PI: 8.4653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016452272.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-193484155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+ +l+g
  XP_016452272.1 34 PVYRGVRRRR-WGKWVSEIREPRK---KSRIWLGSFSSPEMAARAYDVAAYCLKG 84
                    68*****777.**********843...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014479.15E-5716No hitNo description
PfamPF008474.1E-133484IPR001471AP2/ERF domain
SMARTSM003801.2E-343598IPR001471AP2/ERF domain
PROSITE profilePS5103223.3143592IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-223594IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-313593IPR001471AP2/ERF domain
PRINTSPR003671.3E-93647IPR001471AP2/ERF domain
CDDcd000181.61E-303693No hitNo description
PRINTSPR003671.3E-95874IPR001471AP2/ERF domain
SuperFamilySSF1014479.15E-5121148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEKRQQPPPP PPPSPPVNCR KIDIESGGSS TRHPVYRGVR RRRWGKWVSE IREPRKKSRI  60
WLGSFSSPEM AARAYDVAAY CLKGCKTQLN FPDEIERLPR PITSTARDIQ AAAAMAANNA  120
IIVKKKNQEN CGSDDFWEEI ELPELKDGND YNLYSEVWQW RFCNYGMFSS DNNTFINDDG  180
VV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-192294174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016452272.11e-134PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI24e-52ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A1S3YJZ11e-133A0A1S3YJZ1_TOBAC; ethylene-responsive transcription factor ERF023-like
STRINGXP_009790153.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138741314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.13e-38ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]