PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016452038.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28313.2 Da    PI: 7.8638
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016452038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.6e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye++s
  XP_016452038.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box94.51.7e-31841759100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       + +++s+++e+ kLk+++e+Lqr qRhllGedL++L++ +L +Le qL++slk+iRs++++l+l+q+ +lq kek   e+nk L++klee
  XP_016452038.1  84 IITDNEQSSCREYLKLKAKYESLQRYQRHLLGEDLGPLNIDDLDHLEVQLDTSLKHIRSTRTQLMLDQLTDLQSKEKLWLEANKLLERKLEE 175
                     5567899**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.067161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.28E-43278No hitNo description
SuperFamilySSF554552.62E-33279IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2687173IPR002487Transcription factor, K-box
PROSITE profilePS5129715.33289179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFSN RGKLYEFCSS  60
NNMLKTLDRY QKCSYGTLEV NRSIITDNEQ SSCREYLKLK AKYESLQRYQ RHLLGEDLGP  120
LNIDDLDHLE VQLDTSLKHI RSTRTQLMLD QLTDLQSKEK LWLEANKLLE RKLEEIYTEN  180
NLQQPWGGEQ SVTYSQQHAQ SQGFFQPLDC NSTLQIGYDP ITTSSQITAV TNAQNVNGMV  240
PGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-278917317101Developmental protein SEPALLATA 3
4ox0_B2e-278917317101Developmental protein SEPALLATA 3
4ox0_C2e-278917317101Developmental protein SEPALLATA 3
4ox0_D2e-278917317101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3020150.0AJ302015.1 Lycopersicon esculentum mRNA for MADS-box protein (TM29 gene).
GenBankAY3705270.0AY370527.1 Petunia x hybrida MADS-box protein 12 (PMADS12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016452038.10.0PREDICTED: developmental protein SEPALLATA 1-like
SwissprotQ8LLR21e-128MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1S3YJ180.0A0A1S3YJ18_TOBAC; developmental protein SEPALLATA 1-like
STRINGXP_009757151.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]