PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016451922.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 325aa MW: 35892.9 Da PI: 6.5539

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016451922.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.7	7e-40	55	115	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++++kcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s XP_016451922.1 55 HDHSIKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 115 57889*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-30	49	109	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	57	113	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.031	59	113	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	61	97	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010067	Biological Process	procambium histogenesis
GO:0010087	Biological Process	phloem or xylem histogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MGITSLQVCM DSSDWLQDTI HEEGAAGIDS SSSPISEDII CSRPLIVERR LRPPHDHSIK 60 CPRCDSTHTK FCYYNNYSLS QPRYFCKTCR RYWTKGGTLR NIPVGGGCRK NKKVSSKKSN 120 IETANNQNPT DLQLSFPDQM LAFSHHHFMS SNNFGLGNHQ GNNFMLENPT AIDFMEGKYE 180 ALVGCTSSRN QDFLGNGDIG MISTPTGFGH DINSHGNIIA PNFAFGMATT MDAGNNFGTT 240 EMDSSHHHQR LMLSTYENNQ HEEQIINAVD VKPNPKILSL EWHDQVLGCS DAGKESFGYY 300 SSVGGLGSWT GLMNGYGSSA TNPLV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00580	DAP	Transfer from AT5G62940	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009765174.1	0.0	PREDICTED: dof zinc finger protein DOF5.6-like
Refseq	XP_016451922.1	0.0	PREDICTED: dof zinc finger protein DOF5.6-like
TrEMBL	A0A1S3YIZ6	0.0	A0A1S3YIZ6_TOBAC; dof zinc finger protein DOF5.6-like
TrEMBL	A0A1U7VS12	0.0	A0A1U7VS12_NICSY; dof zinc finger protein DOF5.6-like
STRING	XP_009765174.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4895	22	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	7e-54	Dof family protein