PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016451629.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 446aa    MW: 49498.1 Da    PI: 5.6393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016451629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.53.5e-129774462374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +elLl+cAeavs+  + +a+ l++ l++ +s +g+pmqRl ay++e+++arl++s+s +yk+l+++e +    se l++++++++++P++kf++ 
  XP_016451629.1  77 KELLLACAEAVSDAYFPAAEVLMNVLEQKVSISGEPMQRLSAYMLEGIRARLFSSGSIIYKKLKCKEPT---NSELLSYMQVLYHICPYYKFAYT 168
                     689*****************************************************************9...89********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN  I ea+ +e+r+HiiDf+i qG QW+ L+q+La Rp+gpps+RiTgv++++s   +   l+ +ge+Lak+Ae+++vpfefn+ +a + +++
  XP_016451629.1 169 SANVVIDEAMTNENRIHIIDFQIAQGSQWMFLIQSLARRPGGPPSVRITGVDDSQSAhaRGGGLQLVGEKLAKVAESCRVPFEFNA-AAISGSEV 262
                     *****************************************************9988889999***********************.8999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ele+L +++gEalaVn+ + lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n++ F  rf e+l+yy+a+f+s++a+ pr++++ri+
  XP_016451629.1 263 ELENLYIRHGEALAVNFPYILHHMPDESVSTVNHRDRLLRLVKSLSPKIVTLVEQESNTNTAAFIPRFRETLDYYTAMFESIDAGRPRDDKQRIS 357
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      E+++++r++vn++acega+r+erhe ++kW++rl++aGF+p pls+++ + ++ +l+ ++s+ yr+ e++g+l+lgWk+r+L ++SaWr
  XP_016451629.1 358 AEEHCVARDVVNIIACEGADRVERHELFGKWSMRLKMAGFTPCPLSQSVGEAINDMLKDYSSN-YRIAENKGALYLGWKNRALATTSAWR 446
                     *************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.06750427IPR005202Transcription factor GRAS
PfamPF035141.2E-12677446IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
QSTISDQHHS SDNTYGSPLS GCSGVDGVLS EMANKLLGPE SDIDDSSSCS FNDVVSEPSS  60
LTKWNRVLEI ASSLDVKELL LACAEAVSDA YFPAAEVLMN VLEQKVSISG EPMQRLSAYM  120
LEGIRARLFS SGSIIYKKLK CKEPTNSELL SYMQVLYHIC PYYKFAYTSA NVVIDEAMTN  180
ENRIHIIDFQ IAQGSQWMFL IQSLARRPGG PPSVRITGVD DSQSAHARGG GLQLVGEKLA  240
KVAESCRVPF EFNAAAISGS EVELENLYIR HGEALAVNFP YILHHMPDES VSTVNHRDRL  300
LRLVKSLSPK IVTLVEQESN TNTAAFIPRF RETLDYYTAM FESIDAGRPR DDKQRISAEE  360
HCVARDVVNI IACEGADRVE RHELFGKWSM RLKMAGFTPC PLSQSVGEAI NDMLKDYSSN  420
YRIAENKGAL YLGWKNRALA TTSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-588344526378Protein SCARECROW
5b3h_A2e-588344525377Protein SCARECROW
5b3h_D2e-588344525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016451629.10.0PREDICTED: scarecrow-like protein 13, partial
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1S3YHC40.0A0A1S3YHC4_TOBAC; scarecrow-like protein 13
STRINGXP_009804066.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13