PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016451539.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BBR-BPC
Protein Properties Length: 333aa    MW: 37283.9 Da    PI: 9.0215
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016451539.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind367.62.3e-11213331301
       GAGA_bind   1 mdddgsre..rnkg....yyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                     mdd+g++e  r+k+    ++ ++ +s+k     q+m+++ erda+i+ernlalsek+aa+aerdma lqrd+a+aern a++erdn++++l+++e
  XP_016451539.1   1 MDDSGNHEnaRHKPpqgqWFMQHqPSMK-----QIMAIMGERDAAIQERNLALSEKRAALAERDMAILQRDSAIAERNSAIMERDNAIATLQYRE 90 
                     7888776668888643344555556676.....************************************************************** PP

       GAGA_bind  89 nsla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeekle.alpieeaaeeakekkkkkkrqrakkpkekkak.kkkkkseksk 175
                     ns++    s +p+g+q+ +++k++++ q  +++ pql++++++ ++++++e + p++ aa+e ++++++k++++ak+  ++k++ k+ kk +k+ 
  XP_016451539.1  91 NSMNsgnmSPCPPGCQIAHEVKHMHHPQLhVHHqPQLGEPTFNHSDMHMSEsSIPLSPAAPELTKSRRNKRSKEAKEVTSSKRTsKPSKKVKKEG 185
                     **99999889******************964446*********9999987625788888888888887776666655444443335555455554 PP

       GAGA_bind 176 kkvkkesader......................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
                     ++ +k   de+                      +k+++k+++ +ln+vs+Dest+PvPvCsCtG lr  YkWGnGGWqS+CCt ++S+yPLP+ +
  XP_016451539.1 186 EDLNKTMLDESqewngaqemgggnddvnrqlgvTKTDWKDQGRGLNQVSFDESTMPVPVCSCTGDLRPSYKWGNGGWQSSCCTNNLSMYPLPMLP 280
                     5544444442257889******************************************************************************* PP

       GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     ++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHGtn+++ti+
  XP_016451539.1 281 NKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 333
                     ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.0E-1541333IPR010409GAGA-binding transcriptional activator
PfamPF062171.4E-971333IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDDSGNHENA RHKPPQGQWF MQHQPSMKQI MAIMGERDAA IQERNLALSE KRAALAERDM  60
AILQRDSAIA ERNSAIMERD NAIATLQYRE NSMNSGNMSP CPPGCQIAHE VKHMHHPQLH  120
VHHQPQLGEP TFNHSDMHMS ESSIPLSPAA PELTKSRRNK RSKEAKEVTS SKRTSKPSKK  180
VKKEGEDLNK TMLDESQEWN GAQEMGGGND DVNRQLGVTK TDWKDQGRGL NQVSFDESTM  240
PVPVCSCTGD LRPSYKWGNG GWQSSCCTNN LSMYPLPMLP NKRHARIGGR KMSGSAFTKL  300
LSRLAAEGHD LSNPVDLKDN WAKHGTNRYI TIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823020.0FJ982302.1 Nicotiana tabacum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312138.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_016451534.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451535.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451536.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451537.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451538.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451539.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451540.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
SwissprotQ8L9991e-134BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLH1ZN850.0H1ZN85_TOBAC; GAGA-binding transcriptional activator
STRINGXP_009803495.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-127basic pentacysteine 6