PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016451527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 327aa MW: 36592.5 Da PI: 10.1206 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 377.7 | 2e-115 | 1 | 327 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 mdd+g+r+ r+k+ + + ++ +s+k q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erdn++++l+++e XP_016451527.1 1 MDDSGHRDngRHKPpQGQwlmQHqPSMK-----QIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRE 90 999*998888888732222232234444.....************************************************************99 PP GAGA_bind 89 nslasalpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkke 181 s++ + +v+++ ++ +++ + + + p++++++++ r+++ +e++p++ a+e ++ +++k rak+pk+ + +kk+ k kkvk+e XP_016451527.1 91 SSISGGGQIARGVVKHMHHPQQHVHvH-HqPHMGEPTYNPRDMHVNESMPVSPVAPEPTKPRRNK---RAKEPKAMTGSKKTPKA---SKKVKRE 178 997766555556665555544443324.359*******************998777666655555...55555554444333322...2333333 PP GAGA_bind 182 sader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247 ++d + sk ++k++dl+ln+v++De+t+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yPLP++ XP_016451527.1 179 TEDLNqttfgksqewkgaqemgdasddlnrqlavSKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAV 273 33311234566678999****************************************************************************** PP GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+ XP_016451527.1 274 PNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNHWAKHGTNRYITIK 327 *****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.0E-163 | 1 | 327 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 3.7E-106 | 1 | 327 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MDDSGHRDNG RHKPPQGQWL MQHQPSMKQI MAIMAERDAA IQERNLALSE KKAALAERDM 60 AILQRDSAIA ERNNAIMERD NAIATLQYRE SSISGGGQIA RGVVKHMHHP QQHVHVHHQP 120 HMGEPTYNPR DMHVNESMPV SPVAPEPTKP RRNKRAKEPK AMTGSKKTPK ASKKVKRETE 180 DLNQTTFGKS QEWKGAQEMG DASDDLNRQL AVSKPDWKDQ DLGLNQVAFD ETTMPVPVCS 240 CTGVLRPCYK WGNGGWQSSC CTTNLSMYPL PAVPNKRHAR IGGRKMSGSA FTKLLSRLAA 300 EGHDLSNPVD LKNHWAKHGT NRYITIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ808724 | 0.0 | KJ808724.1 Nicotiana tabacum GAGA-binding transcriptional activator mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313105.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_009798749.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_009798750.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_009798751.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016451527.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016451528.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016451530.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016451531.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016509512.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016509513.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016509514.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016509515.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016509516.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_018628854.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
Refseq | XP_018628855.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2 | ||||
Refseq | XP_018628856.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2 | ||||
Refseq | XP_018628857.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2 | ||||
Refseq | XP_019244940.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
Refseq | XP_019244941.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
Swissprot | Q8L999 | 1e-141 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A076L2D6 | 0.0 | A0A076L2D6_TOBAC; GAGA-binding transcriptional activator | ||||
TrEMBL | A0A1J6J273 | 0.0 | A0A1J6J273_NICAT; Protein basic pentacysteine6 | ||||
TrEMBL | A0A1U7Y9Y3 | 0.0 | A0A1U7Y9Y3_NICSY; protein BASIC PENTACYSTEINE6-like | ||||
STRING | XP_009798749.1 | 0.0 | (Nicotiana sylvestris) | ||||
STRING | XP_009610156.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5353 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-127 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Entrez Gene | 107776186 | 107826981 |