PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016451337.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 304aa MW: 34305.4 Da PI: 6.1584

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016451337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +v+++G+g+W++++ g++R+ k+c++rw +yl XP_016451337.1 14 KGPWTPEEDIMLVSYVQEHGPGNWRAVPTNTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	47.4	4.5e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ + lG++ W++Ia++++ Rt++++k++w+++l XP_016451337.1 67 RGSFTDQEEKMIIQLQAVLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.822	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	5.24E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-17	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	6.29E-11	16	61	No hit	No description
PROSITE profile	PS51294	19.378	66	116	IPR017930	Myb domain
SMART	SM00717	2.5E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	2.27E-10	69	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.0E-24	69	114	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGRPPCCDKI GVKKGPWTPE EDIMLVSYVQ EHGPGNWRAV PTNTGLRRCS KSCRLRWTNY 60 LRPGIKRGSF TDQEEKMIIQ LQAVLGNKWA AIASYLPERT DNDIKNYWNT HLKKLKKLEA 120 SDLYSKEGHC LSPLNSSSRG QWERTLQTDI NTAKQALQNA LSLEKSSPIP EYTTTDVKPI 180 NLGCYSYIKQ EGKVSTSTYA SSAENIAKLL KQWTRSDSTN ISEQSKASSS TQLSCNNNAT 240 NEEFESLSSF ESFEQSNSDQ FSQSLTPEAG KLHCEISKRE VDDQVPLSVM LESWLFDEND 300 DLLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-26	14	114	4	103	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016451337.1	0.0	PREDICTED: myb-related protein 306-like
Refseq	XP_016451338.1	0.0	PREDICTED: myb-related protein 306-like
Swissprot	P81392	1e-101	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A1S3YHB7	0.0	A0A1S3YHB7_TOBAC; myb-related protein 306-like
STRING	XP_009618496.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	3e-95	myb domain protein 94

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]