PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016451170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NF-X1 | ||||||||
Protein Properties | Length: 1120aa MW: 120897 Da PI: 8.1874 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 21.9 | 3.7e-07 | 444 | 461 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+Cq+ CH G+C pC XP_016451170.1 444 CGVHRCQAVCHSGDCAPC 461 ****************** PP | |||||||
2 | zf-NF-X1 | 18.6 | 4.1e-06 | 540 | 558 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC XP_016451170.1 540 CGQHSCESLCHSGHCPPCL 558 ******************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 1.41E-7 | 143 | 214 | No hit | No description |
PROSITE profile | PS50016 | 8.831 | 152 | 213 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 155 | 210 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 9.48 | 155 | 211 | IPR001841 | Zinc finger, RING-type |
CDD | cd06008 | 4.50E-6 | 244 | 305 | No hit | No description |
SMART | SM00438 | 0.023 | 267 | 285 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.4 | 269 | 284 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.90E-12 | 312 | 360 | No hit | No description |
Pfam | PF01422 | 7.7E-4 | 322 | 339 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.018 | 322 | 341 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.32E-8 | 376 | 421 | No hit | No description |
Pfam | PF01422 | 6.2E-4 | 386 | 403 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0066 | 386 | 405 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.36E-13 | 434 | 482 | No hit | No description |
Pfam | PF01422 | 1.9E-6 | 444 | 461 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 3.2E-5 | 444 | 463 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 18 | 502 | 513 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 190 | 502 | 536 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.31E-9 | 530 | 582 | No hit | No description |
Pfam | PF01422 | 1.0E-4 | 540 | 557 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 2.0E-4 | 540 | 559 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 6.00E-5 | 587 | 635 | No hit | No description |
SMART | SM00438 | 0.34 | 597 | 615 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.6E-4 | 650 | 665 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.022 | 650 | 680 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 4.5 | 682 | 708 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.021 | 689 | 710 | IPR000967 | Zinc finger, NF-X1-type |
Gene3D | G3DSA:3.30.70.330 | 2.0E-4 | 929 | 974 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1120 aa Download sequence Send to blast |
MSFSSAQNNR RNNNSNRPGN NPVQSARREW LPRGSTATTA VSAAPVTTTV TTTVVSPVFN 60 LNGSSSAGNG REKDNVSAAP VNRRNQTYVG PNLNKGPTYA RRERGRENHN YQANRVERAV 120 NGRINQGEHT RLKDPNLPQL VQEIQEKLLK GNIECMICYD MVRRSAPVWS CSSCYSIFHL 180 NCIKKWARAP TSVDMSAEKN QGFNWRCPGC QSVQLTSSKE IRYICFCGKR PDPPSDLYLT 240 PHSCGEPCGK KLEKELPGHD LSEEDLCPHV CVLQCHPGPC PPCKAFAPAR SCPCGKEVIT 300 TRCSDRKSVL TCGQQCGKLL DCGRHRCEQT CHVGPCGHCQ VIVNAYCFCK KKTEVVLCGD 360 MGVKGDIKIE DGVFSCSSAC GRKLSCGNHI CLELCHPGPC GDCALLPSKV KTCCCGKSSL 420 EDERHSCLDP IPTCSKVCGK SLRCGVHRCQ AVCHSGDCAP CLVPVTQRCR CGSTSRTVEC 480 YKTQAEVEKF TCDRPCGQKK NCGRHRCSER CCPLSNPKNS VTGGWNPHFC SMPCEKKLRC 540 GQHSCESLCH SGHCPPCLET IFTDLTCACG RTSIPPPLPC GTPSPSCQLP CSVPQPCGHP 600 PTHSCHFGDC LPCAVPVAKE CVGGHVILRN IPCGSKDIRC NKLCGKTRQC GLHACARTCH 660 SSPCDFSAGP SNGSRASCGQ TCGAPRRDCR HTCTALCHPS SPCPDVRCEF PVTITCSCGR 720 VTANVPCDAG GPIVDSVFEA SIIHKLPSPL QPIEINGKKV PLGQRKLTCD DECAKMEKKK 780 VLSDAFGITP PNLEALHFGD AAVSEVLGDL LRRDPKWVLS IEERCKCLVL GRSRGGVNAL 840 KVHVFCPMLK EKRDAVRLIA ARWKLSVNAA GWEPKRFITV HVTPKSKAPA RILGAKGCTV 900 NNIAQPAVFD SLVDMDPRLV VALFDLPRDA DISALVLRFG GECELVWLND KNALAVFSDP 960 ARAATAMRRL DQGSAYCGAS VVPQSGVASA VTSATNAWGV SGAAKDGGGA AALKGNPWKK 1020 AVVQEPHLRE SPWDPEEWSK NPTDSAPSAW RTNEATTAAS SNRWSVLEPE MTSNLPRASI 1080 TIKEPVTEPG VGGSALPPKP QDVGVDEMAD VVDDWEKAYD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767499.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1 | ||||
Refseq | XP_016451170.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A1S3YGC0 | 0.0 | A0A1S3YGC0_TOBAC; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A1U7VYN9 | 0.0 | A0A1U7VYN9_NICSY; NF-X1-type zinc finger protein NFXL1 | ||||
STRING | XP_009767499.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9313 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |