PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016451085.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | STAT | ||||||||
Protein Properties | Length: 695aa MW: 78464.9 Da PI: 5.4383 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 189.6 | 3.5e-59 | 209 | 328 | 1 | 120 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 ldv+l++++++p++ +vevva L+yad+ ++vek+ d+eapLL++ydG+e++s+drp+k++ GrasfklkisqLsskcdnrLf+i+feipk+ +y XP_016451085.1 209 LDVTLMDSFSRPITEEVEVVALLVYADDEAPVEKPVDDEAPLLTNYDGIEYASSDRPSKVISGRASFKLKISQLSSKCDNRLFCIRFEIPKMGNY 303 89********************************************************************************************* PP STAT 96 pfleavskpirCisrsrntrssslt 120 pfle++s+pirCisr+rntr++sl+ XP_016451085.1 304 PFLEVFSRPIRCISRNRNTRAASLM 328 ********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 6.55E-8 | 21 | 131 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Gene3D | G3DSA:2.60.120.200 | 6.3E-5 | 64 | 136 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Gene3D | G3DSA:3.30.505.10 | 2.5E-7 | 598 | 655 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 4.27E-10 | 599 | 659 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.39 | 601 | 679 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MGIQDYGFLE DLQVEFKDYD GTNGFFLCFW FYLNKASTLP STILLQIMQK HPVATSHAPF 60 LLLDEKKRLL LYPLLTSWRE DAYATSESEF PMKKWVHVGC EVTKDLLRLY LDGEIVGEKS 120 LTSSLNNDSV SDSSEISLPC ISGKGSQLDG YVYSAELLPV VSSIKNHYVK DPPVQLSIDS 180 SSAYEIEEDT DGVWSIVGGK ASCRRNFSLD VTLMDSFSRP ITEEVEVVAL LVYADDEAPV 240 EKPVDDEAPL LTNYDGIEYA SSDRPSKVIS GRASFKLKIS QLSSKCDNRL FCIRFEIPKM 300 GNYPFLEVFS RPIRCISRNR NTRAASLMLR KSSLGIHLLN GSQSPILEDG SSDLPSIVRE 360 AKQSLSSKRV KLGQEKLCAN FKDDFVLQQA NGESKSHSWI SEDNYAYHNS LVARPVSRGR 420 AENFSSDSEN SETTNSVIDD LPSNLDPISD VDVFKYCLGD LNERRLLLKE MAMTAKEEEL 480 ATFAERVSLF SGCSHHRHQI SISKRLIEEG IKCWNLISDD NHHVPWMNLV SGLQEHFLKM 540 TFGRTRSLTH QDFDLLRRVS SCQDLVSQDN FEKLWCWLYP VAFTLSQQCI TSLWGSASPV 600 WIEGFITKEE AESSLRGQGP GTFILRFPTS RSWPHPDAGN LVATYVGSDY TIHHRLVSLD 660 FIYSFGSKGM TIKPIQDMLL EQPELRRLGR IVRSQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210354 | 1e-127 | AC210354.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0102J11, complete sequence. | |||
GenBank | HG975519 | 1e-127 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016451085.1 | 0.0 | PREDICTED: uncharacterized protein LOC107775818 isoform X1 | ||||
TrEMBL | A0A1S3YG37 | 0.0 | A0A1S3YG37_TOBAC; uncharacterized protein LOC107775818 isoform X1 | ||||
STRING | XP_009625506.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9394 | 23 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |