PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450667.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 791aa    MW: 90555.4 Da    PI: 6.7046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.7e-05136185332
                     HHHHHHHHHHHHHHHHHHHHHHCTSCC.C..................... CS
             HLH   3 rahnerErrRRdriNsafeeLrellPk.as...................k 32 
                     +++n+ E+r+R ++ + f+  r+ lP+ ++                   +
  XP_016450667.1 136 KKANILEQRYRTNVGELFAHVRKKLPWaDPkvvkevidaelykllgertA 185
                     578************************55455555555555555555552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045583.7E-569165IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045577.2E-13168260IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
PfamPF007493.3E-121267572IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
Gene3DG3DSA:3.40.50.6203.4E-39267336IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523749.85E-88267581No hitNo description
CDDcd008071.02E-139267577No hitNo description
TIGRFAMsTIGR004404.9E-191268788IPR004514Glutamine-tRNA synthetase
PRINTSPR009872.3E-7271283IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780274285IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009872.3E-7300313IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.101.4E-43340444No hitNo description
PRINTSPR009872.3E-7445455IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6203.4E-39447496IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.106.4E-31497574IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
SuperFamilySSF507151.26E-56575785IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
PfamPF039502.0E-42575766IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
Gene3DG3DSA:2.40.240.103.1E-30583693IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.101.6E-27694784IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MVKEEDSKTL ELFLKIGLDE KTAKNTLANN KVTTNLTAVI HEAAVTDGCD RTVGNLIYTV  60
ATKFPANALN HRPTLLQYIV STKIKTPAQL EAAFTFLAAT ASGDLNTQEF EEACGVGVEV  120
SKDDIERAVS EVFEEKKANI LEQRYRTNVG ELFAHVRKKL PWADPKVVKE VIDAELYKLL  180
GERTAADNEK PVKKKKEKPV KAEDKAKVDE TPAPKPSEEE LNPYSIFPPP EENYKVHTEI  240
YFSDRPVLRA CNSKELLEKH LKVTGRKVLT RFPPEPNGYL HIGHAKAMFV DFGLAKERDG  300
GCYLRFDDTN PEAEKKEYID HIKEIVGWMG WEPYKITHTS DYFQDLYELA VELIKRGHAY  360
VDHQTAEEVK EYRERKMNSP WRDRPIEESL RLFDEMKKGM IDEGKATLRM KQDMQSDNFN  420
MYDLIAYRIK FTPHPHAGDK WCIYPSYDYA HCIVDSLENI THSLCTLEFE TRRASYYWLL  480
DALGLYQPFV WEYSRLNVSN TVMSKRKLNR LVTEKWVDGW DDPRLMTLAG LRRRGVTSTA  540
INAFVRGIGI TRSDCSMIHL SRLEYHIREE LNKTAPRTMV VLNPLKVIIT NLEAGIVTDL  600
DAKKWPEAPV NDASSFYKVP FSRVVYIERT DFRLKDSKDY FGLAPGKSVL LRYAYPIKCT  660
DVILADDKET VLEIRAEYDP SKTTKPKGVL HWVAEPSPGV DPLKVEVRLF DRLFLSENPA  720
ELEDWLGDLN PESKVVIQNA YAVPLVRTAA LGGRFQFERL GYFAVDQDST SEKLVFNRTV  780
TLRDSYAKGG K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r3z_C0.0978830798Glutamine--tRNA ligase
4ye6_A0.097887775Glutamine--tRNA ligase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754448e-89HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755178e-89HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797950.10.0PREDICTED: glutamine--tRNA ligase
RefseqXP_016450667.10.0PREDICTED: glutamine--tRNA ligase
SwissprotP527800.0SYQ_LUPLU; Glutamine--tRNA ligase
TrEMBLA0A1S3YF680.0A0A1S3YF68_TOBAC; glutamine--tRNA ligase
TrEMBLA0A1U7YGK90.0A0A1U7YGK9_NICSY; glutamine--tRNA ligase
STRINGXP_009797950.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69741213