PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016450611.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 262aa MW: 30500.1 Da PI: 6.2509

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016450611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80	4.4e-25	87	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ +++++ + + tr gC a l+v ++ ++kw+vtk+++eHnH+l+ XP_016450611.1 87 DFYMAYGRRIGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYIHRKDR-VlpPPPATREGCPAILRVALR-ESKWVVTKFVKEHNHALM 176 6****************************************98883332.2448899**********.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-22	87	176	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MGFYKSDVAM GSPSSPAFGL DERKDFPPVE SNDDHGYFDE ELTTDMDMYV AEDDKCLGHS 60 NGEQTSSDNA IEPQIGMEFN SRDDARDFYM AYGRRIGFTV RIHHNRRSRI NNVVIGQDFV 120 CSKEGFREKK YIHRKDRVLP PPPATREGCP AILRVALRES KWVVTKFVKE HNHALMSPSK 180 VPWRGSTRKL VSQDEKDQRI RELTLELYNE RQRCKRRCAA YQEQLQTLLK FIEDHTDHLS 240 RSVEEAVQRV KELENEQLEE SD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	215	RQRCKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016450611.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_016450612.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_016450613.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A1S3YF26	0.0	A0A1S3YF26_TOBAC; protein FAR-RED ELONGATED HYPOCOTYL 3-like
STRING	XP_009620541.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14445	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	9e-39	FAR1 family protein