PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016450608.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 29284 Da PI: 5.8298 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.5 | 4e-27 | 91 | 177 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA+++GF +r+++ ++s rnge ++r++vC+keg++++++++ + +r+ r gCka++ vkke++gkw+v+kl++eHnH+l+ XP_016450608.1 91 YYSTYATHLGFVMRVDAFRRSMRNGELVWRRLVCNKEGFSKSRQNQ--NGQRKCRAIREGCKAMIIVKKEQSGKWVVAKLVKEHNHPLV 177 8*****************************************9988..778888889******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-25 | 91 | 177 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDENNNATDD AEMVESSSGK ELTTNCVEAE GRLNMEPYVV DENNTTADDG EMVESSSGKE 60 LTRNGVEAEG RPNLEPYVGM EFESEEAAKA YYSTYATHLG FVMRVDAFRR SMRNGELVWR 120 RLVCNKEGFS KSRQNQNGQR KCRAIREGCK AMIIVKKEQS GKWVVAKLVK EHNHPLVVKP 180 ANTRIGSILC QTPDDKDVKI RELTAELQKE RKRSAVLQEQ LAMVLKDMED HSDQLSKNIN 240 DIVKSVKELE SRKIVSPNGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 1e-143 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 1e-143 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016450608.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A1S3YF31 | 0.0 | A0A1S3YF31_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
STRING | XP_009620544.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12791 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 9e-83 | FAR1 family protein |