PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016450456.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 326aa MW: 36351.3 Da PI: 7.3902

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016450456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	93	6.1e-29	51	148	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL++ k++i++l+ ++ ++ ++ +++++ a+n +++ XP_016450456.1 51 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIEVTKHEIDKLPPLQIPPGYFAqFQGDHHFDAANLRAKskvidtdt 145 78*************************************************************66666444322222222221111122233333 PP TCP 89 ..k 89 XP_016450456.1 146 vyG 148 321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.774	52	110	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.5E-26	52	146	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MNSSGNSFQA KQESGGTNNS KLTSKATTST SSRQWGGFKN PRIVRVSRTF GGKDRHSKVC 60 TIRGLRDRRI RLSVPTAIQL YDLQDRLGLS QPSKVVDWLI EVTKHEIDKL PPLQIPPGYF 120 AQFQGDHHFD AANLRAKSKV IDTDTVYGKN KSIASNEQEN QEEIGGYVPQ ISAQSFFPLG 180 NRSPNLPGLM NNSMPFNSYY PWEPNSSLSL AHFGQPQTEE SSQNNFPLSL ASSLSLPSGS 240 QVYFNPTATT FSPMISPYMT NYPIENDPRA QLNHFHFLSS SSQHVLPNPP VSTLNLIKPF 300 SLNDDPRWIH SREDDDDSQP HEGGDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-19	57	111	1	55	Putative transcription factor PCF6
5zkt_B	7e-19	57	111	1	55	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009781748.1	0.0	PREDICTED: transcription factor TCP5-like
Refseq	XP_016450456.1	0.0	PREDICTED: transcription factor TCP5-like
TrEMBL	A0A1S3YDZ2	0.0	A0A1S3YDZ2_TOBAC; transcription factor TCP5-like
TrEMBL	A0A1U7WT27	0.0	A0A1U7WT27_NICSY; transcription factor TCP5-like
STRING	XP_009781748.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	7e-47	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5