PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016450439.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 438aa MW: 49671.1 Da PI: 5.9913

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016450439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	239	2e-73	68	435	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fse..vsPi 90 elL + A+ v+++++ +a+++L+ + as +g+p+qR++ yf+ AL++r+ r+ ++ + ++ ++ +n +eel ++ l f + ++P+ XP_016450439.1 68 AELLQASAQLVATRKFDRATKFLSLCDQSASAAGTPVQRVVYYFADALQHRIDREIGKMPITREADIEAYSNDVEELVMD-LepavFAKrpLFPY 161 5789999*********************************************55544433333333333333333332.23466654449* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfA.eelgvpfefnvlva 183 +++ +t qaIl+++++++rvH iD+ i+ G +W +++q+La+R+e p +l+i vg+ sk+++e +g+rL+ fA e+l+++f+f++ v+ XP_016450439.1 162 RQVTSFTGIQAILDSTKTAKRVHLIDLCIKSGSHWTTFMQTLADRDECPLkHLKISSVGR----SKKKMEDVGRRLSAFAaETLNISFSFKT-VV 251 ********************************************65544*****....9**********73679****.79 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 ++l +l+ e+++v+ +E++aV + + l ++l+ + +++s +++++ksl+P ++v+ve a++ ++F + f e+l+y+sal d+ e+ XP_016450439.1 252 SDLRNLKSESFEVEADEVVAVYSDVILWTMLAWPNDMDS----LMEVIKSLNPCIIVLVEGIANTYLPDFIDSFNETLYYFSALTDCSEVL---- 338 99************************966666666....******************************************99.... PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveeesgslvlgWkdrpLvsvSa 372 ++ +E +++++ i+n+++ g+e + rh +l+ Wr+ + ++G+ + ls+ +a+ll k +++g + e ++++lv+ Wk+ p++ vSa XP_016450439.1 339 HKGVPIYEGFYIQKVIRNMITYHGEENVPRHGNLKVWRDLFAKFGMVETDLSHLSLIEASLLFDKSEFRGlCTCELDEKCLVIRWKKTPMICVSA 433 89999**********************************************************999789999***************** PP GRAS 373 Wr 374 W+ XP_016450439.1 434 WK 435 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	35.872	41	414	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.0E-71	68	435	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MEAKKRGDHA EEKQESVVLS SAPTIMKIAR QRLLNHIAQK SDAYSIIFNP PTANSGLSPE 60 LEQDLDLAEL LQASAQLVAT RKFDRATKFL SLCDQSASAA GTPVQRVVYY FADALQHRID 120 REIGKMPITR EADIEAYSND VEELVMDLEP AVFAKRPLFP YRQVTSFTGI QAILDSTKTA 180 KRVHLIDLCI KSGSHWTTFM QTLADRDECP LKHLKISSVG RSKKKMEDVG RRLSAFAAET 240 LNISFSFKTV VSDLRNLKSE SFEVEADEVV AVYSDVILWT MLAWPNDMDS LMEVIKSLNP 300 CIIVLVEGIA NTYLPDFIDS FNETLYYFSA LTDCSEVLHK GVPIYEGFYI QKVIRNMITY 360 HGEENVPRHG NLKVWRDLFA KFGMVETDLS HLSLIEASLL FDKSEFRGLC TCELDEKCLV 420 IRWKKTPMIC VSAWKFQH

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MEAKKRGDHA EEKQESVVLS SAPTIMKIAR QRLLNHIAQK SDAYSIIFNP PTANSGLSPE  60
LEQDLDLAEL LQASAQLVAT RKFDRATKFL SLCDQSASAA GTPVQRVVYY FADALQHRID  120
REIGKMPITR EADIEAYSND VEELVMDLEP AVFAKRPLFP YRQVTSFTGI QAILDSTKTA  180
KRVHLIDLCI KSGSHWTTFM QTLADRDECP LKHLKISSVG RSKKKMEDVG RRLSAFAAET  240
LNISFSFKTV VSDLRNLKSE SFEVEADEVV AVYSDVILWT MLAWPNDMDS LMEVIKSLNP  300
CIIVLVEGIA NTYLPDFIDS FNETLYYFSA LTDCSEVLHK GVPIYEGFYI QKVIRNMITY  360
HGEENVPRHG NLKVWRDLFA KFGMVETDLS HLSLIEASLL FDKSEFRGLC TCELDEKCLV  420
IRWKKTPMIC VSAWKFQH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-29	96	435	32	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798274.1	0.0	PREDICTED: DELLA protein RGL1-like
Refseq	XP_016450439.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A1S3YE77	0.0	A0A1S3YE77_TOBAC; DELLA protein RGL1-like
TrEMBL	A0A1U7YGB0	0.0	A0A1U7YGB0_NICSY; DELLA protein RGL1-like
STRING	XP_009798274.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8500	17	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-43	RGA-like 1