PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016450398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 602aa MW: 66018 Da PI: 4.6496 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 359 | 7.1e-110 | 234 | 601 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + LlecA+ +++++ e+a + L rl+el+s++gdp++R+ +yf+eAL +rl+ ++++ +ps s+++ +e + ++k+f++++P+ kf+hl XP_016450398.1 234 LKSLLECAR-LADSEPENAVKSLIRLEELVSQQGDPTERVGFYFLEALYSRLSCQTER-----SPSIFSTYTPEELTLSYKAFNDACPYSKFAHL 322 578******.566689999999*******************************94444.....444445555679999***************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 taNqaIlea+e+++r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s g + +l +tg+rL++fA+ l+++fef++ + + +++ XP_016450398.1 323 TANQAILEATEKATRIHIVDFGIVHGIQWAAFLQALATRSAGKPvSIRISGIPSVVLGnsPAASLLATGNRLRDFAKLLDLNFEFEP-ILTPVQE 416 ****************************************88777*********877788999************************.799**** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 l+ +++r++p+E+l Vn++lql++llde+ + + + L+l ksl+P +v++ e e+++n+ Fl+rf +al+yys++f+sl+ +l r+s er+ XP_016450398.1 417 LNESSFRIDPDETLSVNFMLQLYNLLDETSVSVK---TALNLAKSLNPSIVTLGEYEVNLNNVGFLQRFKNALNYYSTVFESLDPSLTRDSPERV 508 **************************88877777...9********************************************************* PP GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373 vEr +lgr+i +v +e+a rre +e +e+W+e +e aGFk+v+ls++a++qak ll +++ s y + ++ ++ l W+d+pL++vS+W XP_016450398.1 509 EVERLILGRRIAGAVGTEEAGtRRECMEDKEHWKELMEGAGFKEVTLSHYAMSQAKILLWNYNySSSYGLIDSPPGFLsLAWNDKPLLTVSSW 601 ****************999877*****************************************9999998877665555************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.572 | 207 | 580 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-107 | 234 | 601 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MAAYMCTDSG NLMAIAQQVI KQKQQQEQLQ QQEQQQHQQF LGGVNPLCLS PWTGTHQSLT 60 NSPTLGYGGL TGPGFTDPFQ VVAGGPDGGE PGFQFPNLEH HSTGFRFTDF SGGPGGEFDS 120 DEWMESLIGG GDSTGSSNLQ SGSYPWHTSS EFAALYGDPF SSCPNRLSIG SSPPPPPTSD 180 LNGVIFSETQ KNLNPLQPWV PPSSSPPVVH KESKVASIDV PCSSPETFSS KPLLKSLLEC 240 ARLADSEPEN AVKSLIRLEE LVSQQGDPTE RVGFYFLEAL YSRLSCQTER SPSIFSTYTP 300 EELTLSYKAF NDACPYSKFA HLTANQAILE ATEKATRIHI VDFGIVHGIQ WAAFLQALAT 360 RSAGKPVSIR ISGIPSVVLG NSPAASLLAT GNRLRDFAKL LDLNFEFEPI LTPVQELNES 420 SFRIDPDETL SVNFMLQLYN LLDETSVSVK TALNLAKSLN PSIVTLGEYE VNLNNVGFLQ 480 RFKNALNYYS TVFESLDPSL TRDSPERVEV ERLILGRRIA GAVGTEEAGT RRECMEDKEH 540 WKELMEGAGF KEVTLSHYAM SQAKILLWNY NYSSSYGLID SPPGFLSLAW NDKPLLTVSS 600 WH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-154 | 230 | 602 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605592.1 | 0.0 | PREDICTED: scarecrow-like protein 4 | ||||
Refseq | XP_016450398.1 | 0.0 | PREDICTED: scarecrow-like protein 4 | ||||
Swissprot | A0A024B7I0 | 0.0 | SCL7_POPEU; SCARECROW-LIKE protein 7 | ||||
TrEMBL | A0A1S3YEH1 | 0.0 | A0A1S3YEH1_TOBAC; scarecrow-like protein 4 | ||||
STRING | XP_009605592.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8905 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 0.0 | GRAS family protein |