PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450214.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 295aa    MW: 31793 Da    PI: 6.3882
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450214.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.1e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
   XP_016450214.1  5 KQKWTSEEEAALKLGVAKYGVGKWSTILKDPEfagvlRSRSNVDIKDKWRNL 56
                     79************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.528161IPR017930Myb domain
SuperFamilySSF466891.57E-15258IPR009057Homeodomain-like
SMARTSM007171.7E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-14556IPR009057Homeodomain-like
PfamPF002491.6E-8556IPR001005SANT/Myb domain
CDDcd116606.45E-21656No hitNo description
SMARTSM005268.7E-14118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.54E-13119195IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.626120188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.5E-12123188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.1E-8125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKLGV AKYGVGKWST ILKDPEFAGV LRSRSNVDIK DKWRNLHAMA  60
SGRGSRQPGR TGYKSIQPTV KHVDSALHVS TVFENGIEVL DAKSLAASYE NVEDVGSKEA  120
ISRLDDLILE VIAGLKEPRG SSRTTISSYL EEHFVAPPDF EKLLVANLKA LVENGRLIKA  180
KHQYRISPGR VSSDARGNDF PLLLEGKQKD SPKLENNGVG ILTKAQIDAE LAQMMSMSAE  240
EAAAAATQAV AEAEAATAEA ERAARDAEKA EAEAEAAQCF AEAALKALNP RTVRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450214.10.0PREDICTED: single myb histone 6-like isoform X1
TrEMBLA0A1S3YDK30.0A0A1S3YDK3_TOBAC; single myb histone 6-like isoform X1
STRINGXP_009622790.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-63telomere repeat binding factor 1