PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016450200.1 | ||||||||
Common Name | NtmybB | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 588aa MW: 65805.8 Da PI: 8.7388 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.5 | 7.4e-19 | 57 | 100 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd ll ++vk++ g++Wk+Ia++m+ gRt+ qc +rwqk+l XP_016450200.1 57 WTEEEDNLLTEVVKRFKGRNWKKIAECMN-GRTDVQCLHRWQKVL 100 *****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 61.6 | 1.7e-19 | 106 | 152 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+l+v++v+++G + W+ Ia+ m+ gR +kqc++rw+++l XP_016450200.1 106 KGPWSKEEDDLIVELVEKYGCKKWSFIAKSMP-GRIGKQCRERWHNHL 152 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 51.4 | 2.5e-16 | 158 | 200 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r++WT++E+ l ++++ +G++ W+ Iar ++ gRt++ +k++w+ XP_016450200.1 158 RDAWTEQEESVLCHYHQIYGNK-WAEIARFLP-GRTDNAIKNHWN 200 789*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.443 | 47 | 100 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-15 | 53 | 102 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.36E-15 | 56 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.8E-24 | 56 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.53E-14 | 57 | 100 | No hit | No description |
Pfam | PF00249 | 2.6E-16 | 57 | 100 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 31.005 | 101 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.0E-32 | 103 | 199 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-17 | 105 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-18 | 106 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.35E-16 | 108 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 117 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.136 | 157 | 207 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-15 | 157 | 205 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-14 | 158 | 201 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.41E-11 | 160 | 200 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 160 | 207 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MIQVKEESQT LDFSGFASCS SFSDSSYEAS TPRYSSEPGS SYRRSSGPTK RSSQAGWTEE 60 EDNLLTEVVK RFKGRNWKKI AECMNGRTDV QCLHRWQKVL NPELVKGPWS KEEDDLIVEL 120 VEKYGCKKWS FIAKSMPGRI GKQCRERWHN HLDPTIKRDA WTEQEESVLC HYHQIYGNKW 180 AEIARFLPGR TDNAIKNHWN SSVKKRLNLN LPSRLVLDTE SEGSPNFSSD KKKIEIKKHP 240 VQAQNAEQTI FLGKQTGLDN AAVALSTDLR IGYAYSAGNA KHKDTSLFGA CISAEENVRD 300 LIKPLGGIQF GKADVLPIGE TDKPCQSNLS RTKISYPLSA SSSDFPLDQL HHTSWSTSQV 360 EAVHPTTFRS MYESPKRSRH DTVNDPNCDF LSLSLASFTE VHSQSTKKNK AYDTQSSLGL 420 KQQGSLYYEP PQLKDMMIPL TDENLSRDDL IRQQNGHPFC STPPSLKLTV SANGSSPESV 480 LRNSAMSYTR TPSIIRKKNS RFPEAATHSR CTGTTSPTHI FPRASDREDT SNLKDRFSGC 540 KSSASGKSLG RRLEYAFDME WDASRCCTPV SAASPCALRL GGNTMLTP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-64 | 57 | 207 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-64 | 57 | 207 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 372 | 377 | ESPKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB056124 | 0.0 | AB056124.1 Nicotiana tabacum NtmybB mRNA for Myb, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312123.1 | 0.0 | uncharacterized protein LOC107775040 | ||||
Refseq | XP_016450200.1 | 0.0 | PREDICTED: uncharacterized protein LOC107775040 | ||||
TrEMBL | Q948S4 | 0.0 | Q948S4_TOBAC; Myb | ||||
STRING | XP_009606734.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10393 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 2e-80 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Entrez Gene | 107775040 |