PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450195.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 877aa    MW: 97045.2 Da    PI: 6.5579
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450195.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.6e-15324405179
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                     f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+
  XP_016450195.1 324 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDT 405
                     99**************************666667778***************9989999999***9.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-16321405IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-23321405IPR015300DNA-binding pseudobarrel domain
CDDcd100178.18E-19322405No hitNo description
PROSITE profilePS508639.305324427IPR003340B3 DNA binding domain
SMARTSM010194.5E-13324418IPR003340B3 DNA binding domain
PfamPF023623.1E-12324405IPR003340B3 DNA binding domain
PROSITE profilePS5105014.065575625IPR011124Zinc finger, CW-type
PfamPF074963.1E-11580622IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MGSMICMNEL CRATTSSEWK KGWSLKSGGF AKLCYNCGSA FENLVFCETF HSEESGWREC  60
KTCRKLIHCG CIVSKYLYEC MDYGGIACIN CASQLDGHSI RPIQIPGDDL PNGTLGTKAT  120
QPLGVENKMD ENSFDKRRVM RLSKPVETSE SGQLFQTQKN DIKQETMVPI GNVSTCFSNL  180
NQQPVGTASL FGKPDNDRQS QGVKDMYELI NQPSLNFSLS TLVGASSSAQ PFPGGDVEGR  240
EQSKSSPFQL GQRTRHILPK PPKPSPNSGS ESNKAMASQT RVARPPAEGR GGRNQLLPRY  300
WPRITDQELQ QISGDLKSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP  360
IRIQDIKGKE WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTGNSSF FLLMKKKQKE  420
ISSYDQPCLL SILPSGFAET SFTGMTENLQ VSVAPSLLGL FAKQAFEFAL SLNTNSFSXS  480
KHEKNGGRAS DDSVNRQVPI SEKKKARNIG SKNKRLLMHA DDVMELRITW EEAQELLRPP  540
PTSKPTVVVI EDYEFEEYEE PPVFGKRTIF TARSSGHQEQ WAQCDSCSKW RRLPVHVLLP  600
AKWTCSDNIW DSRRCSCAAP DEINPRELEA LFRVGKDLKR RKLVENNEDC EPSGLDALAT  660
LAVLGDNIGD LGEPSVGATT KHPRHRPGCT CIVCIQPPSG KGKHQPTCKC NVCLTVKRRF  720
KTLMLRKKKK QSEREAELAQ AKDQVPPKDG SETDGASGTD QLLHINQSEN EHMNLSENER  780
DTNGDQTEEF GAGKGQLDLN SHPNRDDDML VEATAGMTMT SLVNATDLPL EYLTQNGLES  840
LGDSLLSRAA GESEGNHPDN GFMKTADAEQ ENKGDEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-563024052105B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1635641KDLKRRK
2716727KRRFKTLMLRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-108HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450195.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1-like
TrEMBLA0A1S3YDA20.0A0A1S3YDA2_TOBAC; LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1-like
STRINGXP_009772834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2