PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016450028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 582aa MW: 64769.1 Da PI: 6.2714 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 411.8 | 6.4e-126 | 212 | 581 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+a+++++l + l+++ + ++s +gdp+qRl ay++e+L ar s++++y++l+++e + + l+++++++e++P+lkf++ XP_016450028.1 212 LKQLLIACARALAENKLDDFEVLVTKARSTVSITGDPIQRLGAYIVEGLVARKELSGTTIYRSLRCKEPA---GNDLLSYMHILYEICPYLKFGY 303 689***************************************************9**************9...99******************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++aN aI ea +e+ vHiiDf+i qG+QW++LlqaLa+Rp+g+p +Ri g+++p s+ + + l ++++rL+ + e++++ +efn+ v + XP_016450028.1 304 MAANGAIAEACRNENYVHIIDFQIAQGTQWMTLLQALAARPGGAPYVRISGIDDPVSQyaRGDGLAAVEKRLSAISEKFNIAVEFNA-VPVFAPE 397 *******************************************************999999**************************.6888899 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++ +L+v+pgEa+aVn+ lqlh+++desv+++++rde+++++ksl Pk+v++veqe+++n+++F+ rfleal+yy a+f+s++++l+r+ +eri XP_016450028.1 398 VTKAMLDVRPGEAVAVNFPLQLHHTPDESVDVNNPRDELIRMIKSLCPKIVTLVEQESNTNTAPFFPRFLEALDYYHAMFESIDVTLARDRKERI 492 99********************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +vE+++l+r+ivnv+aceg+er+erhe l+kW++r+++aGF+++pls+++++ +k l+r+++ + y++ e++g+++lgWk+r+L+s+SaW XP_016450028.1 493 NVEQHCLARDIVNVIACEGKERVERHELLGKWKSRFMMAGFRQYPLSSYVNSVIKDLMRRYS-EHYTLVEKDGAMLLGWKERNLISASAW 581 **************************************************************.55************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.743 | 186 | 563 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-123 | 212 | 581 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MDAHHFYDYG VTGSDLSCSS YPTISSLPNR LSGTSKFDSE NSPISPLANY LDSETFTTLS 60 DCQEQHSSTE NLSGASSSSN SSLDYNHYFH RPSPSPDCLP EGLLVFSGGN AALQNAVHSQ 120 NMQHALLQLE SALMGPDEEV TKSSPSYGGN KAAQTSNQRS RAWTNESKVL HQNETQRSQI 180 SLFTKSGNGI LSQERDKVLY NLPLHGVPSS NLKQLLIACA RALAENKLDD FEVLVTKARS 240 TVSITGDPIQ RLGAYIVEGL VARKELSGTT IYRSLRCKEP AGNDLLSYMH ILYEICPYLK 300 FGYMAANGAI AEACRNENYV HIIDFQIAQG TQWMTLLQAL AARPGGAPYV RISGIDDPVS 360 QYARGDGLAA VEKRLSAISE KFNIAVEFNA VPVFAPEVTK AMLDVRPGEA VAVNFPLQLH 420 HTPDESVDVN NPRDELIRMI KSLCPKIVTL VEQESNTNTA PFFPRFLEAL DYYHAMFESI 480 DVTLARDRKE RINVEQHCLA RDIVNVIACE GKERVERHEL LGKWKSRFMM AGFRQYPLSS 540 YVNSVIKDLM RRYSEHYTLV EKDGAMLLGW KERNLISASA WY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-63 | 209 | 581 | 1 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ767660 | 0.0 | KJ767660.1 Nicotiana tabacum GRAS2 protein (GRAS2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794690.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Refseq | XP_016450028.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A1S3YDF5 | 0.0 | A0A1S3YDF5_TOBAC; scarecrow-like protein 21 | ||||
TrEMBL | A0A1U7Y794 | 0.0 | A0A1U7Y794_NICSY; scarecrow-like protein 21 | ||||
STRING | XP_009794690.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3441 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-177 | GRAS family protein |
Publications ? help Back to Top | |||
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