PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016450004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 525aa MW: 57170 Da PI: 8.1339 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107.2 | 8.2e-34 | 232 | 288 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d++v+ei+Y+g+Hnh+ XP_016450004.1 232 DDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 288 8****************************************.***************8 PP | |||||||
2 | WRKY | 107 | 9.6e-34 | 411 | 469 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+ XP_016450004.1 411 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 469 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 24.134 | 226 | 290 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.2E-30 | 226 | 290 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-26 | 229 | 290 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-37 | 231 | 289 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-26 | 232 | 288 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-37 | 396 | 471 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-30 | 403 | 471 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 39.192 | 406 | 471 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-40 | 411 | 470 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-26 | 412 | 469 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MAENEGSSSS SSTSRAQLLR PTITLPPRNS MESLFSGGSN GISPGPMTLV SSFFSDNDPD 60 SDCRSFSQLL AGAMSSPAGF SGVRPGFPPV PPPSTAAMAQ EYKQSRPTGL VISQPPTTFT 120 VPPGLSPGGL LDGFFSPGQG PFGMSHQQVL AQFTTQAAPA QSQLHIRPDY PSSSTAAAAS 180 LSQFQSLASN AAANQQIPPP ALNPNIVKES SDVSLSDQRS EPASFAVDKP ADDGYNWRKY 240 GQKQVKGSEY PRSYYKCTHS NCPVKKKVER SLDGQVTEII YKGQHNHQPP QSSKRSKESG 300 NPNGNYNLQG SYEPSSEGLA GNFNKPKEGE TSYSLRMKDH ESSQATHDQI SGSSDSEEVG 360 DAQTRVDGRD IDERESKRRA VEVQTSEAAC SHRTVTEPRI IVQTTSEVDL LDDGYRWRKY 420 GQKVVKGNPY PRSYYKCTSQ GCNVRKHVER AASDPKAVIT TYEGKHNHDV PAARNSSHNT 480 TNNSMSQLRP HNPVVDKPAA MRRTDFPNNE QQPIVLLRFK EEQIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-42 | 232 | 472 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-42 | 232 | 472 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB711133 | 0.0 | AB711133.1 Nicotiana benthamiana NbWRKY12 mRNA for transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597443.1 | 0.0 | PREDICTED: probable WRKY transcription factor 4 | ||||
Refseq | XP_016450004.1 | 0.0 | PREDICTED: probable WRKY transcription factor 4 | ||||
Swissprot | Q9ZQ70 | 1e-166 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A1S3YCZ8 | 0.0 | A0A1S3YCZ8_TOBAC; probable WRKY transcription factor 4 | ||||
STRING | XP_009597443.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4107 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-148 | WRKY DNA-binding protein 3 |
Publications ? help Back to Top | |||
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