PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016449891.1

Common Name

NtabSPL6-4

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 538aa MW: 58903.7 Da PI: 8.1969

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016449891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.2	2e-42	181	257	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+gC +dls++k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q+ XP_016449891.1 181 CQVQGCGKDLSSCKDYHKRHKVCEVHSKTAKVIVKGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQT 257 **************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.0E-34	175	242	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.812	178	255	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.83E-39	179	258	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-31	181	254	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MESWSYVSGG KGFVSEETIR CIKLPLCAGS REGPEPKECV SIDDGISLGQ NRTSGWELNT 60 PCSWGNSMGC LSNQEGGEKQ DFAEMGYQDL MRKSLPNNQI KDAMSSKVGG QRSFVSIRVP 120 HNSFSGEDES SSVVESNCKD SSLIDLKLGS FKSPNIIPNL SSTVPAKRNR AGGLSSHTPF 180 CQVQGCGKDL SSCKDYHKRH KVCEVHSKTA KVIVKGIEQR FCQQCSRFHL LAEFDDGKRS 240 CRKRLAGHNE RRRKPQTGLH SGRAGRLFQS YAGTRFQGTP FATSSFICQD ILGSGLLHQP 300 KHDLHDWYKN VKVEHSSDYS PQLTMPFTNG HSQPRPLFST SYHTDKHCPA LHDEGITAIT 360 RSKNNVSSNS YLNDIEGSDF VSRSLFHSTS IGSEVLNVMD LASTFQGISS SGCALSLLSS 420 QSQGSSNYSS VVPNSHHLIA PSDNAHYNVT QTSEKFPGMS LKDSTSNASG IFNISGAISA 480 EGRLEQILRN NCGINGSIHG SDYVNTKNLL SCQDGPTIDL LQLSSQLHRV EHQRHSMK

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MESWSYVSGG KGFVSEETIR CIKLPLCAGS REGPEPKECV SIDDGISLGQ NRTSGWELNT  60
PCSWGNSMGC LSNQEGGEKQ DFAEMGYQDL MRKSLPNNQI KDAMSSKVGG QRSFVSIRVP  120
HNSFSGEDES SSVVESNCKD SSLIDLKLGS FKSPNIIPNL SSTVPAKRNR AGGLSSHTPF  180
CQVQGCGKDL SSCKDYHKRH KVCEVHSKTA KVIVKGIEQR FCQQCSRFHL LAEFDDGKRS  240
CRKRLAGHNE RRRKPQTGLH SGRAGRLFQS YAGTRFQGTP FATSSFICQD ILGSGLLHQP  300
KHDLHDWYKN VKVEHSSDYS PQLTMPFTNG HSQPRPLFST SYHTDKHCPA LHDEGITAIT  360
RSKNNVSSNS YLNDIEGSDF VSRSLFHSTS IGSEVLNVMD LASTFQGISS SGCALSLLSS  420
QSQGSSNYSS VVPNSHHLIA PSDNAHYNVT QTSEKFPGMS LKDSTSNASG IFNISGAISA  480
EGRLEQILRN NCGINGSIHG SDYVNTKNLL SCQDGPTIDL LQLSSQLHRV EHQRHSMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-29	175	254	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LC073292	0.0	LC073292.1 Nicotiana tabacum NtabSPL6-4 mRNA for squamosa promoter binding protein NtabSPL6-4, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312117.1	0.0	squamosa promoter-binding-like protein 6
Refseq	XP_009615765.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
Refseq	XP_009615766.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
Refseq	XP_016449891.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
Refseq	XP_016449892.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
Refseq	XP_018630442.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
TrEMBL	A0A125SZN1	0.0	A0A125SZN1_TOBAC; Squamosa promoter binding protein NtabSPL6-4
STRING	XP_009615765.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5187	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-47	SBP family protein

Link Out ? help Back to Top
Entrez Gene	107774760

Publications ? help Back to Top
Han YY,Ma YQ,Li DZ,Yao JW,Xu ZQ Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95. Dev. Genes Evol., 2016. 226(1): p. 1-14 [PMID:26635304]